Stranded on desolate planet, broken and betrayed by those closest to him, John Sheppard struggles to survive. With their memories affected, his team try to remember what happened to him. Alone and hurt, John does everything he can to try and forget.

Set post-Season Two. "Maybe this time you can get one of your precious scientists to clean up this mess for you, because I'm sure as hell not doing it anymore." Jack hits his limit with Global Dynamics, then he hits a literal wall when a scientist uses an untested device on him with disastrous consequences. Major Jack whump.

John gets in an accident and conflict ensues. John and Rodney both get whumped and its set during the time Elizabeth and Carson still inhabit Atlantis. NOW COMPLETE!

Sometimes it's the little choices that make the big differences. Sheppard's friends and family try to save him, in their own ways, for their own reasons... Written for the LJ SheppardHC Secret Santa Exchange. Complete!

Ferocious creatures, erupting volcanoes and an injured Colonel. It's a race against time. Who will win?

Stranded and badly injured, Sheppard struggles to hold on long enough for rescue. *IN PERMANENT HIATUS*

Sheppard's POV - the team accidentally trespasses on sacred ground and Sheppard must face the punishment to save his team. Shep whump, of course.

A rescue turns into a life-and-death struggle for Sheppard and his team.

When Sheppard takes Maj Teldy, Lorne and Vega to explore a frozen wraith outpost, Anne is eager to prove herself. When the mission goes sideways and Sheppard is injured, Anne gets a whole new perspective on trust and what it takes to survive in Pegasus.

Sheppard and team find themselves stranded on a planet at the outskirts of the galaxy with an energy anomaly, a gate that refuses to dial out, and a Medulsan who means to have her pound of flesh. Third story in Deliverance Trilogy. Shep Whump!

Written for the LJ Flashfic Light or Dark. Takes place four days after "Doppelganger." Sheppard H/C with a bit of Beckett thrown in because I love him. The rest of the main characters are in the story as well.

This story takes place in early to mid season 3 and is team focused - Sheppard, McKay, Ronon and Teyla. It includes Sheppard wump and team angst. It has appearances from Carson, Weir, and Lorne. A mission goes terribly wrong when a team member is injured.

Ronon staggered, tried to restrain him again, pulled back his fist back and that’s the moment Sheppard picked to stand between them.

A routine mission to explore an Ancient research facility turns up much more than the team expected. Shep whump!

They get John back.

If there was an award for the worst patient ever, Colonel Sheppard would win it hands down. One-shot. Keller POV.

John Sheppard’s puddle jumper crashes on an alien planet with one passenger on board - Colonel Steven Caldwell. The two men have to depend on one another if they’re going to survive.

An apparent silly mistake lands Sheppard s team in trouble and John must prove his loyalty to one of his team members, when their kidnappers discover her unique link to the Wraith. Shep whump, team fic/whump.

Sheppard has to face an old adversary when a 'Thank You' celebration on Medulsa doesn't turn out quite as planned. But is it really only his skill with Ancient tech she wants, or are her needs more...personal? Sequel to Deliverance. Contains Shep Whump!

When things go FUBAR, it's good to have a team that can understand you.

Written for the SGA Flashfic Hurt/Comfort challenge. Team. Hints of McShep, but nothing overt. After raiders kidnap a number of villagers and one of Atlantis's own, the team mounts a rescue mission that goes smoothly... until it doesn't.

John and Rodney are stuck in an alien prison with no means of escape and the hope of rescue fading. Shep Whump, McKay whump, and John/Rodney friendship

Soon after arriving at an Ancient installation, the team finds themselves trapped inside by a heavy sandstorm. It doesn't take very long before a much greater danger is discovered and it's up to the team to find a way to survive.

This is what happens when you let whumpers request a plot: John Sheppard is kidnapped, shot, forced to aid hostile aliens in their campaign to steal Ancient technology...and he doesn't even have to step foot off Atlantis to do it. John's really bad day.

When Sheppard's team violates local custom, they find themselves in a fight for survival that teaches them all a little bit more the meaning of team, and just how far each of them will go to defend the others. Warning: Shep Whump/HC. K mild profanity.

Trapped in Pegasus with no way to get back home, John is faced with the prospect of spending the rest of his life there and has to come to terms with living among the Athosians, but one of them is not happy about him being there. JT, Post S5 COMPLETE

Comfort comes from an unexpected source when John is unknowingly hurt in a trip and fall accident. Spoilers: Season's 1-5, Rated T for mild language, Chapter 2 has a warning. Story complete, but will be posted in 2 parts.

Sheppard spends a long night incapacitated, with only his team to look out for him. Shep whump, team love.

John and Ronon are captured, but they've got more problems than just trying to escape from their latest captors. Shep whump, John/Ronon friendship

An expedition to a creepy planet brings the team face to face with their own mortality.

Sheppard is injured and the 'gateroom goes into lockdown.

John takes Ronon on a survival training course and nothing goes according to plan.

John can’t even go on a simple road trip without finding trouble. However it brings him closer to his brother. Shep Whump. COMPLETE

After being kidnapped and sold into slavery, the team tries to stay out of trouble until they escape or are rescued. Shep whump, of course.

A journey into the jungle in search of a treatment for the Hoffan virus with Carson Beckett and Sheppard's team becomes one of life-and-death for Sheppard. Sure, there's Shep whump, but as usual, it's equal opportunity whump! Written for SGA Genficathon

Shep whump story written for Flashfic Challenge One at the sheppard hc comm on LJ, with the prompt "traps/trapped".

When Sheppard takes on the plight of the downtrodden men of Medulsa, he gets more trouble than he bargained for. Shep whump prevails! Set late Season 1 so spoilers for any episodes up to and including 'Sanctuary'. Complete - updates every couple of days.

Sheppard finds out about an unsavoury chapter in the Ancients' war with the Wraith. Unfortunately, due to his genes, he is to be held accountable. **Spoilers for Season 3 episode 'Common Ground' and Season 2 Episode 'Michael'** Complete.

Siren is back and has a new game to play with her favorite mortal - John Sheppard. When John falls into a mysterious coma, it is up to Teyla and Ronon to figure out a solution before he is tortured to death in his dreams. Now Complete.

How far would you go, Colonel Sheppard?" asked the tall man. "How far will you go to save him?"

After being captured, Sheppard is separated from his team. Big mistake. Shep whump, some team whump. Violence, language. Gen all the way.

Team Sheppard has been captured, Sheppard has to make it back to the 'gate to get help. Yep, just another day in Pegasus. Written for the team challenge on LJ...yeah, we didn't make it.

Some days the burdens of command are heavier than others.

He would have screamed if he’d had the breath to. Instead he froze, his eyes locked with that of the Iratus bug’s. And then the insect leapt. Spoilers up through Season 2's "Runner" and specifically for "38 Minutes."

An old weapons lab, a strange ancient device, and the Genii. Kolya returns with a new agenda.

The team travels with Carson to a remote outpost where he is to assist a trio of physicians with their research. Power issues and a broken vial containing a virus are only the beginning of Sheppard's problems though. Shep whump.

They had never expected to end up in a war zone. Sheppard is captured, but rescuing him is only the beginning, because Sheppard is badly hurt, the Gate is inaccessible, and enemies are everywhere. Written for the Sheppard hc Secret Santa on LJ.

On a world where Atlantis is a myth and the Wraith are childhood tales, Sheppard and team are captured for information. Surviving is only the beginning. Warning: contains scenes of torture Sheppard .

Things go drastically wrong for Sheppard after Atlantis takes in a group of refugees from a Wraith culling.

It's Christmas Eve and Sheppard is having a bad day of the Ebenezer Scrooge kind. What will he do when confronted with Past, Present and Future? Hints of Sheyla preship. Shepcentric but each of the team has a part to play. Set S5 so beware minor spoilers

When an injured John Sheppard shows up at his door in the middle of the night, David Sheppard finds himself in the middle of a desperate adventure. Hunted by enemies and haunted by the past, can the two brothers survive in a world gone terribly wrong?

The team is ambushed on a routine mission and race for the Stargate under fire. Teyla and Rodney make their escape as ordered, but on the other side, the Gate closes before John and Ronon return.

Todd was eerily calm while his own people swarmed closer. He must have sensed the internal battle and shrugged his shoulders, not caring that the barrel of an automatic rifle was shoved in his face. “You can fight alone, John Sheppard. Your choice.”

It is four days since the events of Remnants, and Sheppard hasn't talked. But something is lurking in a decaying ruin – something that will not only push Sheppard and his team into a new nightmare, but which will force Sheppard to confront the old one.

Sheppard & McKay are abducted and separated on a desert world. Both must struggle to escape and survive. Sheppard is brought to his edge. McKay must hold on to save them both. Buddy bonding, major whump, drama, humor, friendship. Angst. No ship. Season 5

*Be careful. This could be a trap.* Things go a little sideways when Team Sheppard set out in search of an Ancient distress call. Team with appearances from Elizabeth and Carson.

Sheppard falls through a floor, and then the fun really starts! Shep whump! Originally published in Jumper Two in 2007. Spoilers up through Season 2...specifically for the episode "Trinity".

“Be careful, young man,” he said, his gaze intense as he stared at John. “I can see you enjoy a good adventure, but these creatures are not to be fooled with.” A little Halloween fun-Shep whump, no major spoilers, kind of disturbing and creepy at the end

Team Sheppard travels to a new world to establish friendly trade but the natives have their eye on something that's not on the table. Set season 3 pre-Sunday as I'm too fond of Carson, with Elizabeth and a few OCs. Rated K , violence, cussing but NO sex!

Pursued by men who want to kill him, an injured Sheppard struggles to find his way back to his team.

A mission gone bad leaves Sheppard in agony.

Post 'The Shrine,' S5. Sheppard and McKay crash on an alien moon. McKay has to keep it together and keep Sheppard alive while they await rescue.Carson assists in a most unexpected way. Heavy Shep Wump, McKay is pushed to his limit. Some Shep & Weir Ship.

Both Doctor Keller and Colonel Carter have a hard time trying to convince John he shouldn't go on the rescue mission to free Teyla from Michael.

“There’s no choice. Not anymore. You will work for us. You will sever all ties with Atlantis, be it in your heart or in your head, or we will sever them for you.” Equal Sheppard & McKay Whump/Angst

Sheppard is captured and tortured to find out his threshold for pain. Problem is, this wasn't an actual experiment. It was suggested by an old Genii "friend".

Serious Shepp whumpage. John is imprisoned for suspicion of espionage by offworld captors who use a very unusual torture and interrogation technique. Did I say major Shepp whumpage? My first ever Stargate fic.

Chapters 9-14 of the story started in the first part please read that first and sorry for the inconvenience.

Just a little AU left turn for Irresistible. I had an idea and since it involved torturing John I went with it. Second half of story posted as separate story as nothing wants to work for me. Unbetaed! Chapters 1-8

John Sheppard goes on a mission, but gets captured…whump and angst ensue.

A routine mission leaves the team trapped in an old building and surrounded by a group of hostile men. They have no real clue as to why. Some McKay whumpage but Shep gets the brunt of it.

Sheppard, McKay and Ronon are stranded in a cold wilderness without warm clothes or any supplies, and days away from rescue.

In hard times, friends learn to lean on eachother. John and Rodney friendship. Major spoilers for Outcast.

John has one of those days. Rain, common cold and a mudslide add up to an intersting day. This story has three possible endings. Let me know what you think. No Beta, all mistakes are mine.

Speculation on what happens after the end of The Last Man, so spoilers through the end of season 4. This is based on an art concept from the first episode of season 5, so some may consider it spoilers for that as well. Shep whump, Ronon/Shep friendship.

Something is very wrong on Atlantis, and Sheppard is at the heart of it, walking a very dangerous path.

A tag to Quarantine where Sheppard hit the side of the tower a little harder than he thought.

They need only to survive the night. Ronon/Sheppard friendship.

Sheppard needs to write a handbook about being held captive. AU version to “Travelers” where John wasn't returned at the end. HC

After a team fails to return from a mission, Sheppard goes to find out why and ends up alone lost on an unknown planet with no means to return home. Shep Whump. Set in Season 3 somewhere after Sunday. COMPLETE

Sheppard and McKay crash in a storm, but the crash is soon the least of their worries. Written for the Sheppard HC Secret Santa, and therefore contains Shep whump.

The team assists in quake relief efforts on another world. Rating is for subject matter. Set between Reunion and Missing so beware of possible spoilers.

COMPLETE Rodney returns to Atlantis after a long trip only to find more trouble back home. Guess who? Set before Sunday because this is fanfic and I can do that. Shep Whump in an interesting way...

Sheppard's been shot, Rodney has a price on his head, and the hunters are closing in. As the two of them struggle to stay alive, recent events come to a head. Contains Miller's Crossing spoilers.

Season four. Atlantis is visited by John Sheppard from 5 years in the future, and he has a certain four year old girl with him. Spoilers for season four, Sheyla. COMPLETE!

It seems both Sheppard and McKay have promises to keep, but Sheppard must fight an adversary in order to keep his promises. Sheppard whump ahead.

A trade negotiation doesn't quite go to plan leaving Sheppard and Weir in a tricky situation.

Yet another tag to Doppelganger. Just because I would love some extra Shepwhump in addition to the lovely episode we got. Obvious spoilers for Doppelganger. Rating for mild swearing. COMPLETE

Wounded, alone, and pursued by ruthless bandits, John must depend on his team to figure out the clues he's left for them.

AU Shepwhumpy tag fic to Season 4 episode Doppelganger. WARNING! SPOILERS FOR PLOT OF DOPPELGANGER! My take on what might have happened if a certain scene had ended differently.. NOW COMPLETE.

John Sheppard and Teyla are separated from the rest of the team, trapped on a freezing planet.

He was supposed to save her from the monsters, not be one himself. One shot dealing with John and Teyla's mindset after the events of Doppelganger. Mild John Whump with a dash of JT.

The title says it all, folks. Shep Whump!

Not your ordinary, every day, trip through the Stargate... at least not for John Sheppard. COMPLETE! Warning: There be Whump here!

Tag to Lifeline – it's still night, just hours after setting down, but, despite the terrifying events and the exhausting pace of the last few days, not everyone is asleep yet. SPOILERS obviously FOR ADRIFT AND LIFELINE.

Security protocols on an Ancient outpost separate the team, and an accident leaves Sheppard and McKay injured. Can they find each other and the way home? Spoilers through The Return with one tiny one for The Game.

The team are captured and learn that there are two forms of torture, not knowing which one is worse. Lots of Team emotional whump—Shep whump.

Sheppard and McKay are arrested and imprisoned offworld for crimes they didn't commit. After John is injured, Rodney struggles to protect him and find a way out. WARNING: Spoilers through the end of S3.

John activates a strange device and finds himself in the past. While there he helps to shape a member of his team into the leader she is destined to become. COMPLETE! Now revised to fit with series four canon.

On the run with a sick Sheppard, Rodney tries to keep them both alive after being imprisoned. Whump and lots of comfort. Gen.

McKay and Weir are missing, and Sheppard goes to find them. Rating is for violence.

After Sheppard causes an accident in Atlantis, he and Weir find themselves involved in an disagreement. Will the Atlantis team regret the harsh words spoken to Sheppard when he is taken hostage offworld and will they be able to fix the damage to Atlantis in time to save him?

Sheppard and O'Neill take a jumper for a ride. Set immediately following the events of The Return Pt 2

COMPLETE: Injured and on the run, Sheppard and McKay are trapped in a dark ruin with a monster. This, however, is soon the least of their problems.

Sheppard finds himself in the hands of terrorists who plague a new ally. Alone, and certain that Atlantis has no idea where he is, John must find a way to escape before he loses all sense of what is real...and what is not.

What surprises does Atlantis have in store for Sheppard and Ronon? Read to find out.

Sheppard is injured when the team goes offworld to explore an Ancient outpost. There be Shep whump here.

Challenge fic, Elements prompt. Sheppard and team run into trouble when the weather turns bad. Team fic. Shep whumpage.

A bounty hunter caused problems for our team during a routine trade negotiation. Set late season three. Now COMPLETE....

Another ancient device cause trouble for Sheppard. You can't get too much John whumping! Rated for the occassional swear word.

Seriously injured by an alien device, Sheppard is in trouble while the team is hunted by hostile aliens. Warning: Whumps galore! COMPLETED

This is an AU story based on the upcoming season 4 episode Travelers, so there may be spoilers.I'll leave the summary at that as I don't want to include any further spoilers in a story description.

Carson goes offworld with Sheppard's team. Carson POV. Sheppard Wumpage! Spoilers for season three's Irresponsible.

Nothing is ever black and white in the Pegasus galaxy. Rodney and John face a deadly threat where time is not the only enemy. Whumping and Angst.

On a simple mission, the team finds trouble looming when an ancient with a hidden past crosses their path.Now COMPLETE

Shep whumpy missing scene tag fic to the episode Epiphany. Teer had watched as John had fought the Beast... NOW COMPLETE

Caution! The Pegasus Galaxy contains many dangers. Like football, giant space ostriches and sharp edges. Herein be Shep whumping. Gen. COMPLETE. First fic so concrit, feedback appreciated.

Something like this was bound to happen sooner or later. Sheppard gets into deep water and there may not be anything anyone can do to help. This takes place in season 3 after Common Ground. Minor Common Ground spoilers.

Setting: Season 3, some time after 'Common Ground', Story: Trading missions can be murder, Shep whump, McShep friendship, team story, Carson, Genii, Kolya, Now Complete!

The team find themselves on a world with hidden dangers....ShepTeyla centric but a team fic

She’s mad as a hornet and isn’t going to take it anymore. Atlantis encounters a resident just waiting for Daddy to come home. Cowritten by Stealth Dragon and drufan. You know there’s gotta be whump!

When John is trapped without food or water, he must take drastic steps to free himself.

Sheppard is captured by an unknown threat. Will his team find him in time? Warning: dark fic and Sheppard whumping! Rated T for now.

Shep Whump fic written for Sholio as part of the Sheppard HC LJ Secret Santa Challenge. ShepMckay friendship. COMPLETE.

Shep’s shot, slowly bleeding out in the snow, with only his radio to keep him connected to those he cares about most.

The team's in trouble after a betrayal. Sheppard and McKay have been wounded and the team is about to be burnt at the stake by the Genii. Shep whump. COMPLETED.

Tag for Common Ground. Surely Sheppard wouldn't just walk away from his torture unscathed? More Shep whump, I'm afraid. Spoilers for Common Ground. NOW COMPLETE.

Dr. Kavanagh’s hatred for Dr. Weir spills over into revenge and poor Sheppy gets whumped again.

They're all mad here, or maybe it's just Sheppard. A Halloween fic that's not quite a ghost story, but not quite a tea party either.

Carson atones for past sins and Sheppard ends up paying the price. Radek wears the cloak of command…as well as his tuxedo, and Rodney end up with a gun pointed at him…yet again. SheppardMcKay friendship

Sheppard takes Ronon's place for a transgression that the Satedan unwittingly commits and pays a dire price when he becomes target practice for armed natives. Shep whump.

Shep whump, pure and simple. :D ...but if it was a choice between hurt and dead... well, if he couldn’t walk, he’d crawl. He wasn’t ready to die.

Even in the darkest hour, one is never truly alone. John whump in a bad way, nasty team angst, and lots of friendship.

Her heart was in her mouth as they carried him through the gate.. A rather dark Shep whumpy fic. Written for the Sheppard HC LJ Addiction challenge. WARNINGS FOR REFERENCES TO TORTURE AND DRUG ABUSE

An episode tag for Common Ground. Sheppardcentric.

It's a routine offworld mission for Sheppard and his team. Some days, that's all you need for something to go wrong... warning: contains Shep whump!

Sheppard is back on Atlantis after going missing for two weeks but he doesn't have a clue about what happened. Carson Beckett, Rodney McKay and Kate Heightmeyer try to solve the mystery and in the process uncover a plot that could kill them all.

When an offworld meeting goes awry, John is marked with what Rodney calls a bad luck charm and things just go downhill from there.

Missing scene for 3x03 Irresistible. It can't be good to get stunned when you're sick, can it?

Sheppard goes missing and his friends try to move on without him but soon Atlantis is facing a new threat. Shep whump. ShepMcKayWeir friendship. Rated for violence.

More Sheppard and McKay whumping, I'm afraid. I just can't help myself! Written for the leg wound challenge on the whump thread over at GW. Contains scenes of torture, though nothing too graphic. Final chapter posted.

One wrong step for Teyla means one long leap for Sheppard

Sheppard whump. Kinda dark. Implied torture. Written for the Sheppard HC LJ sensory loss challenge. Oneshot at present may well be continued later.

An explosion in one of the labs leads to Shep whumpage galore... No ships other than friendships. Chapter 11 now up!

Written for the Sheppard HC community fic challenge at LJ, revenge of an old adversary. Sheppard has a run in with a horribly, familiar face. Naturally Shep whumping ensues...

When Sheppard and Weir are separated from their team on a hostile planet, a wounded Sheppard is forced to guide her to the stargate alone through deep woods and a gauntlet of enemy soldiers. Shep Whump and JohnEliz friendship.

McKay and Sheppard are stranded on a planet with no hope of immediate rescue. Sheppard gets infected with a parasite and McKay tries not to die.

Request fic for Kodiak Bear Country feat. Sheppy in restraints. Shep whumpage galore. Now complete.

Sheppard has the flu. Doesn't he? This was written as part of the Feverfic challenge at the SheppardHC Community at LJ.

Rodney’s in a spot of trouble and John bails him out. Shep whumping. Complete

This is my alternate and more exciting ending for 'The Long Goodbye'. What if Teyla had shot? Contains Shepwhumping.. PS: Not a deathfic!

Kolya has a plan to exact restitution from Sheppard for his crimes against the Genii people and the Colonel ends up paying a high price.

This is a sequel to Christmas in the Infimary by Titan5 and is very very proudly presented as the first collaboration of Titan5 and Rogue1503 Warnings for Whumping and SheppardWeir stuff...

On a routine scouting mission, Major Sheppard mysteriously falls ill. As the team races to find a cure, Major Sheppard faces his own demons.

Sheppard is trapped in a wraith dart underwater. How are McKay and Beckett going to get him out before it's too late? Okay so I really suck at summaries, so sue me Please R & R. Thanx.

Doctor McKay shares something with Major Sheppard: the flu!

The team suffers separation anxiety, Sheppard gets whumped by the Genii, and McKay MacGyvers a bomb out of an MRE. (Complete)

Lt Ford’s POV while he watches over McKay as he cares for an injured Sheppard on a hostile planet. SheppardMcKay friendship, all around team building. One-shot (complete)

Did anybody really think that Major Sheppard could just walk away after all that happened to him on that planet? Spoilers for season one episode The Defiant One. COMPLETE

Major Sheppard has some painful side effects from the bug bite suffered in "38 minutes." (Story is PG-13, the language I anticipated for the 'R' rating never felt right, so I didn't use it).