'What they'd done to him, he, McKay and Teyla, was tantamount to torture and betrayal. Then along came Kavanagh.' Will John Sheppard survive long enough to forgive? And remember? Shep whump/team angst. XD

Sheppard once more faces his nemesis in a battle to outwit and out class her and keep the timeline on track. Sarayah, of course, has other plans - plans that could change both past and future alike! Shep Whump (of course) and trouble for all the team.

IN PROGRESS! ATF Story. For 22 years Vin Tanner has nurtured a desire for justice for the murder of his mother. With the help of Larabee's new ATF team he just might get his chance - if he can just keep his cover as a motorcycle outlaw under control and stay alive! Fair warning, not an easy read & very long but if you like detail and a long plot, u might enjoy it

When John is convicted of killing an innocent he has more to face than hard time. Serious Shep whump, and major angst for the team as John is sent to the worst prison in the Pegasus galaxy. Set in season 5. Keller is there, but Carson is the main doc.

You know the drill: Ancient tech goes wrong, but it goes more wrong for Sheppard than for anyone else...

What do you get if you cross an experimental Stargate with a mad Medulsan? Big trouble for Major John Sheppard, that's what.Shep whump a-plenty, plus some action and adventure thrown in for good measure.

A young slave, who believes that all hope is lost, discovers all he has to do is trust.

Sheppard's team responds to a request by an ally world and quickly discovers that there's more going on than unusual technology scaring local shopkeepers. When John goes missing, it's up to Sam Carter and the rest to get him home safely. COMPLETE

When Steve and Danny find a man lying on the beach, they have no idea its John Sheppard or the impact he and his team will have on their lives. A H50/SGA story that starts a wild ride for Steve & John. Danny whump, but Steve and John get the brunt of it.

Captain Sean Hanson shouldn't have been nervous. After all, Sheppard accompanying his team off world was supposed to be a routine mission… supposed to be. Written for the LJ Sheppard HC Fic Exchange.

Very mild slash. Sometimes the punishment doesn't fit the crime.

A test of courage to free a child sets John on an unwilling journey, where he has to find his past not only to escape oppression, but also to survive. Shep whump and team angst, with my favourite doc Carson

Prompt fic: Aftermath ficlet. John is back home after being held captive and tortured. Pure comfort, with the team finding their way around him.

Serving under the famous Lt. Col. John Sheppard isn't quite what new recruit, Alex Weiss, is expecting. When John takes a team of Marines to a boring little island in the middle of a typhoon things get really interesting.

Sheppard's POV - the team accidentally trespasses on sacred ground and Sheppard must face the punishment to save his team. Shep whump, of course.

After the Coalition finds the team not guilty of their crimes against the galaxy, Shiana decides to take matters into her own hands. Shep whump. Now complete.

WARNING...AU...The Winchesters find news of deaths in Las Vegas. When they turn up to investigate, they run into a military team who are also tracking the creature responsible. As the brothers find out, nothing is quite as it seems. NOW COMPLETE!

Stranded on a harsh, desolate world, John and Ronon learn that merely surviving is only half the fight. A simple summary for a complex story. Gen: Drama, Action, H/C

Who knew Kolya had a brother? Certainly not John Sheppard, and that was only the start of his problems as Kolya Jnr wanted payback for the death of his brother. Shep whump and team angst set sometime after Season 5.

When Sheppard takes Maj Teldy, Lorne and Vega to explore a frozen wraith outpost, Anne is eager to prove herself. When the mission goes sideways and Sheppard is injured, Anne gets a whole new perspective on trust and what it takes to survive in Pegasus.

Sheppard and team find themselves stranded on a planet at the outskirts of the galaxy with an energy anomaly, a gate that refuses to dial out, and a Medulsan who means to have her pound of flesh. Third story in Deliverance Trilogy. Shep Whump!

An off world mission goes wrong for Sheppard and his team forcing Atlantis to turn to an old ally possibly with deadly results.

Sheppard and McKay find themselves on opposing sides of a slave revolt. 'Has life no value to you unless it is sacrificed ? ' Shep Whump. WARNING! M Rated for violence, nudity and bad language.

Atlantis mounts a mission to stop raiders on the planet Glostern and two young corporals are put to the test when one of the Atlantis team is wounded.

John is captured by a woman who wants him as her consort but when Shep refuses he's made her slave. Question is can rescue come before their friend is broken beyond repair? Serious Shep whump and team angst Set in Season 3 with Elizabeth and Carson.

John is forced to fight for his life and the lives of his teammates. His opponent may be the most formidable he has ever faced... oh, and there’s also deadly radiation, freezing temps and hypoxia.

When John disappears after a gate accident, Atlantis searches for answers and their missing colonel, while John, stranded off-world, struggles to survive, holding to hope that they'll find him. Written for the Sheppard HC community Secret Santa.

John Sheppard’s puddle jumper crashes on an alien planet with one passenger on board - Colonel Steven Caldwell. The two men have to depend on one another if they’re going to survive.

WWII-AU. The Team as we know it has been transplanted to the South Pacific. Major John Sheppard, navigator Lt Rodney McKay, gunner Sgt Ronon Dex, and friend, Teyla Emmagan are on the island of New Guinea on the eve of the nation's greatest battle.

Sheppard has to face an old adversary when a 'Thank You' celebration on Medulsa doesn't turn out quite as planned. But is it really only his skill with Ancient tech she wants, or are her needs more...personal? Sequel to Deliverance. Contains Shep Whump!

Written for the SGA Flashfic Hurt/Comfort challenge. Team. Hints of McShep, but nothing overt. After raiders kidnap a number of villagers and one of Atlantis's own, the team mounts a rescue mission that goes smoothly... until it doesn't.

This is what happens when you let whumpers request a plot: John Sheppard is kidnapped, shot, forced to aid hostile aliens in their campaign to steal Ancient technology...and he doesn't even have to step foot off Atlantis to do it. John's really bad day.

When Sheppard's team violates local custom, they find themselves in a fight for survival that teaches them all a little bit more the meaning of team, and just how far each of them will go to defend the others. Warning: Shep Whump/HC. K mild profanity.

Comfort comes from an unexpected source when John is unknowingly hurt in a trip and fall accident. Spoilers: Season's 1-5, Rated T for mild language, Chapter 2 has a warning. Story complete, but will be posted in 2 parts.

Sheppard and McKay must journey home after an incident leaves them stranded on a hostile world. Sheppard has amnesia, and as if that wasn't bad enough, has been branded a wanted criminal. Sheppard and McKay friendship and whump.

When Sheppard takes on the plight of the downtrodden men of Medulsa, he gets more trouble than he bargained for. Shep whump prevails! Set late Season 1 so spoilers for any episodes up to and including 'Sanctuary'. Complete - updates every couple of days.

'He was battered, filthy and sporting nothing but grubby, torn boxers with a heavily bloodstained waistband, but not once did he take his eyes off their captors.' Shep whump/McKay angst. McKay POV. Unbeta'd. Prompt at end. XD

A missing scene from the episode Vegas to explain where the cut on John's eye came from.

Sheppard needs help, his team is there for him. Rated for mentions of torture but nothing graphic. Gen, team fic but John centric.

This is a short missing scene for Vegas. Beware - spoilers!

AU; slash. The scents of powder, gun oil, human sweat, and spilled blood are everywhere around him. Not hell, then; and he's pretty sure heaven would be much cleaner. Movieverse.

Todd needs John. John probably needs Todd. They have a common goal again but can they ever be friends? Inclined towards darkfic, Shep Whump. Some O'Neill and Mitchell.

When a marine turns up dead, you call NCIS. When a marine turns up dead, with Iratus bug DNA... well then you need SGA-1. Head butting will ensue. NCIS crossover

After his "retirement" from the Air Force, test pilot John Sheppard finds himself drawn into a world where nothing is what it first seems. Not his new employer, their groundbreaking new plane... or even his irritating co-worker, Dr. Rodney McKay. -- AU.

It started with a strange vessel crashing down from the sky. Then three strangers appeared in a decaying city, willing to risk everything to rescue an injured, imprisoned friend... Outsider viewpoint team fic, with added Shep whump.

When John’s team is captured, John is tortured for information. Things don’t get much easier, even after they escape. Written for the 2nd Annual Ficathon at ShepsAtlantis.

Chapters 9-14 of the story started in the first part please read that first and sorry for the inconvenience.

Just a little AU left turn for Irresistible. I had an idea and since it involved torturing John I went with it. Second half of story posted as separate story as nothing wants to work for me. Unbetaed! Chapters 1-8

This was a bunny raised by Kristen999 and everybetty together. After a tragic accident, Sheppard concentrates on recovering while everyone else deals with the political hornets' nest it stirs up. Set S4. Team fic plus Lorne, Keller, Carter and Zelenka.

Somewhere, within the depths of an injudicious city, darkness waits. Trouble is brewing and the fate of millions of people lies in the hands of a very unsuspecting colonel. Chaos has found him, now what will he do? Whump in abundance.

Sheppard and team go on a vacation, but it turns out to be a struggle just to survive. Set in early Season Four so spoilers up through at least the first half. Shepcentric with lots of Shep whump. Some violence and language but mostly like regular T.V

Sheppard and McKay struggle to survive on a brutal world as Atlantis races to find them.

A look at what happened to Watson, from the Battle of Maiwand to his return to England. As this is a prequel to STUDY IN SCARLET, Holmes makes no appearance whatsoever. Complete.

A sort-of tag for Outcast. When Patrick Sheppard returns home from Washington after attending an energy symposium, it's up to Dave to determine what has put his father in such a strange mood. SPOILERS for OUTCAST, Season 4.

Sheppard is captured and to be a slave to the wraith. It becomes more than a matter of survival, but also a matter of keeping his sanity.

Sheppard needs to write a handbook about being held captive. AU version to “Travelers” where John wasn't returned at the end. HC

The team is off world again, and find themselves in the running for a great prize. The problem is that things are never as simple as they might seem. General team whumpage with an extra dosage of Shep whump because I love him best. Completed story.

Things are not going well for John Sheppard, and they are about to get infinitely worse. Minor whumpage and slight angst. What more could anyone ask for? Rated T for the occasional bad word, some of them in Czech.

Sheppard's Team gets caught up in the politics and murder plots of a desert world. Everyone seems to want something from them, but can they survive what that is?

The sequel, or continuation, of The White Room in which John and Rodney get into all kinds of trouble working as slaves and battling Kolya.

Captured offworld, John and Rodney are sold into slavery. A Shep centred story with a whump or two. Now complete!

Sometimes all that matters are the codes and values you uphold. A deadly vendetta will test loyalties, limits and friendships, with more at stake than anyone realizes. Contains Shep Whump. John,Ronon, Rodney Friendship

Sheppard finds himself in the hands of terrorists who plague a new ally. Alone, and certain that Atlantis has no idea where he is, John must find a way to escape before he loses all sense of what is real...and what is not.

Sheppard really should listen to McKay. This is just some fun with Sheppard whump and the team.

A bounty hunter caused problems for our team during a routine trade negotiation. Set late season three. Now COMPLETE....

Sheppard and his team stumble across a society that may have had some connections with the Ancients. Shepwhumping. ShepMcKay friendship. Warning: Some colorful language present in various chapters. IT'S FINISHED! YAHOO!

Sheppard and McKay go to Mall World, get kidnapped, beat up and rescued. A usual day at the office for them. This story brings back the same race of bad guys as in my story No Good Deed, but is not a continuation of that story and you don't need

Elizabeth was looking forward to watching Col. Sheppard win over a new batch of Pegasus Galaxy recruits... When the Wraith disrupt a routine training mission, Sheppard must show the new guys what it takes to get everyone home. Shep whump ensues. COMPLETE

Vacations usually don't involve attacks by space pirates, emergency crash landings, wild fires, and saving the day when you're already injured.

On a desolate alien planet, John Sheppard is lost in more ways than one.

Sequel to It's Always Autumn in the Old Woods of Despair. After Kate certifies John fit for active duty, an accident threatens his life and leads Kate to reexamine her actions and fitness as a psychologist.

Imprisoned by a cruel and repressive government, John, Rodney and Teyla are forced to make sacrifices to save each other's lives and keep the flame of hope burning. Warning: Very lightly implied noncon. Also, bugs.

Sheppard is captured by an unknown threat. Will his team find him in time? Warning: dark fic and Sheppard whumping! Rated T for now.

After being rescued from three months of torture, Sheppard must find his way home through himself and his friends. Oneshot. Complete.

AU. You can run to the ends of the Earth, but you can't escape from yourself. An illegal immigrant, an emotionally and physically damaged veteran, and a border patrol agent who hates his job ... maybe they were destined to be friends in any universe.

I had lived alone for as long as I remember. Also known as the story where Sheppard and McKay crash, get hurt and need help, and the wraith are afoot.

The title says it all. What every proud owner of a John Sheppard needs. Rated T for mild suggestive comments G Blame it on a silly mood.

Sheppard is stranded on a strange world where people are vanishing, and the team races to find him... and not having much luck at it.

When a scientific mission goes wrong, the Daedalus crashes on an ice planet along with Atlantis's top scientists and a ruthless saboteur. Will rescue come before injuries and the elements take their toll? Complete.

A tale of love, geometry and murder! Miko Kusanagi must bear the burden of and responsibility for murdering the same man, Dr. Rodney McKay, twelve times. Many, many thanks to Kamelion for her enthusiastic support and ideas and to the incomparable Klostes

John hates it, doesn't even know it's happening to him, but pity is what's going to save his life. Shep whump. Team angst, better summary inside.

A trade agreement goes wrong. Sheppard is separated from his team, forced to live a life foreign and dangerous, while the rest of the team and Carson Beckett must cope with the events.

McKay and Sheppard are stranded on a planet with no hope of immediate rescue. Sheppard gets infected with a parasite and McKay tries not to die.

When the Daedalus is sabotaged, Sheppard is put in charge of the investigation by the SGC. Will he find the culprit before it's too late? Mystery, intrigue and whumpin' a'plenty. A collaborative fic from emergencyfan and nebbyjen.

A recent shipment of fresh supplies to Atlantis brings a new kind of trouble to Sheppard and the rest of the gang.

How does Atlantis remain so clean? There are only two possible answers. Atlantis cleans itself or part of the team that got sent to Atlantis included cooks, cleaners and other unsung heroes...

Kolya has a plan to exact restitution from Sheppard for his crimes against the Genii people and the Colonel ends up paying a high price.

Sheppard is the subject of an unauthorized experiment and he isn't having much fun. A little ShepWeir in places. McKayShep friendship stuff as usual.

Team goes to a frozen world for a bit of trade negotiation. Horrible things happen to McKay. Sheppard, Ford and Teyla are here too

The team suffers separation anxiety, Sheppard gets whumped by the Genii, and McKay MacGyvers a bomb out of an MRE. (Complete)