Hey, cupcakes! First Clone Wars story! I know I have a lot of unfinished stories, but I have a lot of ideas! Hope you guys like this one! It's completely out of my own head so far, so I hope it's good. And yes, I changed the timeline a little for the story. Enjoy!

3rd Person pov

A squad of clones ran through the battlefield, without a general. Ahsoka Tano had left a while ago, leaving when the temple had not believed her. While they missed their general and their friend, Darkside Squad had continued, becoming even more odd as time went on. They were accepted, of course, but often chose to keep to themselves. One may think that they were led by Commander Rex, as their leader wore hisarmor now, but Rex had been killed in the line of duty, and passed his armor off to Commander Alpha, leader of Darkside Squad. She was the only female Clone, and was protected fiercely by all of her brothers. They kept it hidden from most of the Jedi, except for Ahsoka, Anakin, and Obi-wan, who had also befriended the Squad. They were engaged on Coruscant when Order 66 was issued. None of the Squad had been implanted with the chip that activated the order, so could only watch in shock and horror as their brothers turned on their Jedi Generals, killing them. They turned on their private comms, cutting out the chatter from the turned Clones, and formulated a plan. They ran through the streets, taking cover when they could, and firing on their turned brothers when they had to. They understood that they would be unable to help, and that these Clones were loyal to only who had issued the order. These were no longer their brothers. They raced to the Jedi Temple, as that was where Alpha had felt most disturbance. She went into the temple first, followed by Droid-Bait, Jumper, Chopper, Razer, Trigger, Gauze, and Popper.

They ran stealthily through the Temple, following the trail of Clone bodies to a balcony. Alpha held up a hand, all five fingers out. Slowly, she lowered one finger at a time, signaling her troops to get ready. They readied their weapons, and heard the sound of blasters and a lightsaber outside. Finally, Alpha held up her hand and gestured towards the doors, where Popper and Droid-Bait were waiting to push them open. They did so, walking out onto the balcony. As they walked, the other Clones looked relieved, and the Jedi they were fighting looked exhausted. Then, Alpha raised her two blaster, and began firing on the others, the rest of her squad doing the same. The Jedi, who they now saw was Obi-wan, looked extremely confused, as well as relieved, as they demolished the Clones. Finally, Alpha turned to him, as the rest of her squad checked to be sure the others were dead.

"Who are you?" Obi-wan asked. Alpha reached up to her helmet, keeping the voice modulator on for later. That was what kept her hidden as a woman. It made her voice sound like the other Clones'. She pulled her helmet off, letting her brown curls fall around her face, though not thick enough to hide the dried tears on her face. She gave him a weak smile as he sighed in relief. "I am sorry about all this, Alpha."

"Why have they turned this way, Obi-wan?" She asked, almost pleading to know. He sighed again, looking as though he aged ten years as he did so.

"The Emperor and Palpatine are one and the same. He ordered the execution of the Jedi. I barely escaped Commander Cody and the rest of my troops."

"But how? How did we not know of Palpatine's treachery before now? And why did he decide to come out now? Are we the only squad left who has not turned on you?"

"I am afraid so, my friend. And that is not the worst news."

"What could possibly be worse?" He looked at her in sorrow.

"Anakin has joined the dark side, and he has killed Padme in his anger. I tracked him to Mustafar, and we fought there."

"Anakin?" Alpha exclaimed in shock. "How could he do that? He was always very against the Dark Side! And killing Padme, that is the one thing I would have considered him incapable of."

"Unfortunately, he has pushed and broken every line and boundary he could, and I fear that he will kill to find his children."

"They are alive then?"

"Yes, a healthy boy and girl. Luke and Leia Skywalker. I am taking Luke to his aunt and uncle on Tatooine, and Bail Organa is taking Leia. I would suggest that you take your squad and try to get as far from Coruscant as possible. Alpha, use your training and find me when the time is right. Until then, take what jobs you can and get far away. Ventress is still at large somewhere, and it would be best not to run into her at this time, especially with her still on the hunt for your blood after your last incident." Alpha nodded, solemly.

"Will you be alright, Obi-wan?"

"Yes. Now, be quick and quiet, and run far away. Strategicretreat, as it were." They exchanged a smile, and Alpha led her squad out and into the dark night. They were alright for a while, taking odd jobs, bounty hunting, and making the Empire hurt. They were a small family now, but they stuck together and protected each other. Then, all but Droid-Bait, Popper, and Alpha disappeared in the middle of a fire-fight, with no trace. Then, Alpha could only watch as her last two brothers were shot down in front of her due to an ambush. She carried on alone, thinking all her true brothers were dead. But what if they aren't?