Hey everyone this is my first story so it might not be that good but I will try. This is a Naruto having Mokuton/EMS/Rinnegan Fanfiction so if you don't like reading that kind of stuff you don't have to read this. This will not have Naruto being super strong at the very beginning and I will compare Naruto to others sometimes in the story to show where he stands at. In this story all of the events will happen two years later. So Naruto's generation will graduate when they are 14. The Uchiha Massacre will happen when Naruto and Sasuke are 10. Now here is the Full Summary!
Summary: Naruto runs off into the Forest of Death on accident because he was to upset to notice. There, he activated his Sharingan and found an abandon hideout from Orochimaru. Soon after Itachi Uchiha offers to teach Naruto and make him his apprentice after discovering how the academy was teaching him. Naruto will journey across the nations to try and discover what peace is in hopes to one day bring it to the World. Naruto x Female Haku x Younger Mikoto. Mokuton/EMS/Rinnegan Naruto.
Chapter 1: Surprise Legacy!
A six year old blonde boy with three whisker marks on each cheek of his face ran off in a random direction in sadness. The boy was none other than Naruto Uzumaki, Jinchuriki of the Kyuubi no Kitsune. Naruto was having a bad day, no, make that a horrible day. First was that he as late to the academy on the first day because he was stuck on a toilet because of rotten milk, milk that he bought a few days earlier in the market in one of the stores. Once he was in the classroom the teacher sent him to stay in the hall until he finished the lesson Naruto interrupted and late to. It turns out that the lesson he was teaching contained all of the basic knowledge he was going to teach that year and he was going to have a quiz the next day to see if they were paying attention. When Naruto came after class to get help, the teacher just said he was busy and can't but in reality Naruto knew that he just didn't want to help.
The second thing was that he wasn't able to use the training grounds at the academy because he wasn't taught how to do anything yet, but the teachers allowed other students to train there, but Naruto didn't mention it and just ran.
After running for a while in the random direction Naruto made it in front of a huge fence that blocked off a forest. Deciding he wanted to just be in peace for a while Naruto climbed over the huge fence and ran into the forest, if he would have looked around more he would have found a gate with a sign saying 'Training Ground 44, The Forest of Death'.
While running Naruto began noticing strange things about the forest. At first it was just the abnormal huge tree's but then it was the huge flowers and plants that seemed to bend towards him and making a mouth opening and closing motion. The final thing was the giant bugs right in front of him that looked hungry. Knowing the best thing to do was run he did just that. For minutes the bugs kept attacking him and giving him injuries and Naruto was only six years old, so in a life and death situation like this he was getting pretty tired out. After about another minute the exhaustion caught up to Naruto and he tripped over a root of a nearby plant. Quickly getting up Naruto turned to face the giant bugs. He came face to face with one of them as it was bring one of it's scythe like arms into a horizontal swing and Naruto began to think really fast. 'Am I going to die here? I don't want to die just yet, I haven't become Hokage yet and proved the village that I am Naruto Uzumaki and not just a brat' and with that Naruto's perception in sight got slower. Seeing where the swing is going to hit, Naruto brought up his small arms and tried to block the attack. Naruto succeeded in blocking it, but was flung across the land and into a small hole under one of the giant tree's. Inside the hole the ground gave out under the force of Naruto hitting it and Naruto fell through. The effects of Naruto blocking the dull part of the scythe like arms was apparent as it cut into his arms deeply and broke them making them take shape in angles they shouldn't be able to do. The last thing Naruto saw before he passed out was the bug trying to get through the hole before leaving. The last thing the bug saw before leaving was a pair of red glowing eyes with one tomoe in each eye.
In a huge cage in Naruto's mind, there was another pair of eyes opening. These were also glowing red but instead of being the same as Naruto's new eyes, they had a vertical black slit. The owner of these pairs of eyes was none other than Kyuubi himself.
'My container is starting to get interesting. Even though he just activated those cursed eyes of that clan, it did allow me to sense that hidden power the boy has. I hate everyone that has ever belonged to that cursed clan... but I will see what this boy holds in the future with this hidden power before I place him with the rest of his cursed clan' after the thought the Kyuubi closed his eyes to take another nap, but not before sending some of his chakra to help the boy out just this once. On the outside Naruto's body was covered in red bubbling chakra that started healing his injuries along with snapping bones in place and then healing them correctly making them like they never broke in the first place.
Naruto started to wake a couple of hours later. It was now dark and looked to be around 9:00 p.m.. Naruto started to open his eyes and sit up slowly. He looked around recognizing the place he was in as not his apartment, the afternoons events then rushed over his memories like a wave as Naruto became wide awake and started looking around to find where he was.
"Where am I? What is this place? It doesn't look like a cave or something under the earth that is natural" Naruto said talking to himself noticing the walls and ceiling were made out of brick that seemed to be cracking.
"How am I suppose to get out of here with the opening up there?" he once again asked himself as he looked up at the opening that was on the ceiling around six feet above him.
"I guess I will have to just look around for another way out or until someone finds me"
Naruto looked around for around a half hour and noticed that his vision was more clear and that he could see in the dark more easier but dismissed it. What he found shocked and disgusted him as he found a room with glass containers that held babies in some liquid, all of them dead. He found a small Library that held a small amount of Jutsu for each element along with non-elemental jutsu in another room across from the laboratory. The room Naruto found himself in was actually what looked like a training ground as he could see wooded posts and dummies in several areas of the large chamber, probably to test out the jutsu that he found in the library.
Naruto currently found himself at the beginning of a passage after the half-hour of looking around.
"This place is pretty cool... well it would be if all those babies weren't dead and in glass containers that looked like big test tubes. I want to practice some of those jutsu in that library though... but Hokage-jiji would probably won't let me. Maybe I can take them with me and hide them and say that nothing was in that room... no, Jiji would know I'm lying so I can't do that" after thinking for a couple minutes he came up with something that a six year old shouldn't have been able to create in a thought process. "Maybe this place is a forgotten laboratory of an evil scientist and if I tell Jiji about this someone in the council that wants power would try to use the evil knowledge to do other evil things claiming it to be good for the village... yes that has to be it. I decided to not tell Jiji about this place and now I can learn jutsu from the library all I want since I only know where it is besides the evil scientist" Naruto declared with a cheerful voice at coming up with what he believes is a good reasoning. (The evil scientist is Orochimaru and the council member that craves power for 'Konoha' is Danzo Shimura... though Naruto doesn't know this as he just created the excuse just so he can learn from the library).
Naruto then began walking through the long passage way to hopefully was an exit to the place he found himself in.
After walking for about an hour an going through twists and turns, Naruto finally made it to the end of the tunnel.
"Fiiiinally I didn't think this was ever going to end. I hope Jiji didn't stop by my apartment after school or he might have found out that I was missing then I won't be able to keep this place a secret" Naruto then climbed the latter that was on the wall that led up to a latch to the surface.
Naruto came out at one of the training grounds that was near the academy. From the looks of it, it looks like it doesn't get used often by the looks of the grass growing out a little and the posts meant for Taijutsu practice had a little dust on it. Luckily for Naruto it was night and barely anyone was out along with his apartment being nearby also, it was the same distance it would take to the academy but if he went from his apartment to the academy it would take him twice as long as it would take him to get to the training ground he appeared in.
Naruto believing no one saw him walking through the streets went up the stairs that led to his door and entered so he could get ready for bed. All the while the only person that noticed Naruto's disappearance and went looking for him looked at where Naruto stood in shock.
This person was none other than the Uchiha Prodigy, Itachi Uchiha and he noticed the change in Naruto's eyes from the usual sky blue to blood red with one tomoe in each eye. Naruto had his clans doujutsu; The Sharingan.
Itachi was brought out of his shock once he heard a yell of surprise from Naruto's apartment... or more specifically... Naruto's bathroom. Itachi decided to wait till Naruto fell asleep so he could place a chakra suppression seal on Naruto so Naruto's Sharingan could deactivate. Since Naruto had a huge amount of chakra for his age, the chakra would like to get used, and since the Sharingan was activated, Naruto is unconsciously sending his chakra to his eyes which is keeping the Sharingan activated. With Itachi placing the chakra suppression seal on Naruto, it will lock Naruto's chakra away, which will deactivate the Sharingan. Since the Sharingan is no longer drawing in anymore chakra Itachi could take of the seal and let Naruto's chakra out again and it won't go towards his eyes since nothing is trying to use his chakra. Once Naruto finds out how to control his chakra even a little bit, he would be able to activate and deactivate his Sharingan at will.
After Itachi forcefully deactivated Naruto's Sharingan he went home to rest. Itachi knew he couldn't tell anyone about Naruto having the Sharingan since he knew his father would demand he be placed in the Uchiha clans custody since Naruto was an Uchiha. With how his father his talking about the Uchiha clan ruling over Konoha, it would be bad if his clan got their hold on Naruto, the Kyuubi Jinchuriki.
Naruto woke up the next morning more refreshed than usual when he wakes up in the morning. Probably just because he was really tired from the adventure he had the day before. Doing his usual routine before his school Naruto got dressed in and got ready for the academy. While running through the streets Naruto didn't notice a pair of blood red eyes watching him.
Itachi Uchiha after finding out that Naruto was an Uchiha, Itachi decided to take it upon himself to see if Naruto is learning enough from the academy, but knowing the villagers and parts of the Shinobi population, Naruto might not be getting that much attention needed on his education.
End of the Academy Day
Itachi was right. Why wasn't he wrong? Because he is known as a genius in the Shinobi arts and can tell when someone is holding back something or doing something the incorrect way just for one person. The teacher that had been teaching Naruto had been teaching Naruto wrong whenever Naruto asked for help on something. When it came to Taijutsu practice the teacher was teaching him the wrong kata's or at least changing the stance on the academy kata's that would make the style fail in a fight.
All of this just confirmed why Itachi wanted to teach Naruto. If Naruto was learning correctly he would have just left the academy to teach him until Naruto was older so he could teach him how to use his Sharingan but that wasn't the case. At least today the academy actually taught the students what chakra was and how to activate theirs so he didn't have to go over that with Naruto. It was currently 3:30 in the afternoon so he decided to take Naruto to one of the training grounds to teach him until night.
Jumping out of the tree outside Naruto's apartment he walked up to Naruto's door and knocked. It was a couple of seconds later when Naruto opened the door to look out to see who would visit him.
"Hello Naruto-kun" Itachi greeted.
"Hello but who are you? Did you want something?" Naruto greeted then asked.
"My name is Itachi Uchiha. It's not me that wants something, but I do offer you something if you accept" Itachi explained.
"Come inside then and tell me what you want to offer" Naruto said as he opened the door more and moved out of the way to let Itachi in.
"Yesterday night I was walking out in the village and noticed you running home. I also noticed a change in your eyes to be more specific. It would seem that you have my clans doujutsu the Sharingan" Itachi revealed in a monotone voice turning around to face Naruto with his three tomoe Sharingan.
Naruto started to sweat at the fact that it has only been one day since he found out he had the Sharingan and one of the Uchiha clan members noticed. Even though he was only six years old, Naruto knows if the Uchiha clan found out he had the Sharingan it would cause a uproar in the village, even if he doesn't exactly know why.
Not aware of Naruto's thoughts Itachi carried on. "I have spent the entire day watching you in the academy to see how the academy teachers are teaching you and I have realized they are not teaching you correctly. I've come here to offer you if you would like to train under me and be my apprentice. Along with teaching you how to be a Shinobi I will teach you how to use the Sharingan and some jutsu I have created myself. So how would you like to learn under me?" Itachi asked still in a monotone voice
Naruto looked at Itachi in surprise. "Why would you want me as your apprentice? You could always ask someone else but you chose me... why?" Naruto asked in confusion.
Itachi was surprised that Naruto would even think this through. He believed the six year old boy would be jumping up and down in joy at being trained to be a shinobi from him. "I chose you because I see potential in you that would change this world of hatred one day. I also want to do this to show your parents my appreciation for what they did when they were alive. Before you ask no I will not tell you who your parents were as if you knew and you accidentally tell someone you will be in danger from their enemies. When I believe you are mature enough to handle the information I will tell you, but not today. Before you start thinking in the future how I am only training you because of what your parents did you could forget about that. I am only training you because of what I see in you and your potential you have. It is only a bonus that I can also think of it as saying thanks to your parents. So does that answer your question?" Itachi surprisingly said keeping his monotone voice the entire time.
Naruto thought over what he said and decided. "Yeah I would like to be your apprentice if you will allow me to. When will we begin?"
"Right now!" Itachi then appeared in front of Naruto and grabbed him and disappeared in a shunshin.
They reappeared back in a training ground, training ground 43 to be more specific. Naruto fell onto his butt from the sudden speed. "Itachi-sensei what was that?"
"That was a jutsu called Shunshin. It is a high speed movement jutsu that helps shinobi move around faster. I will teach you how to do it once I feel like your ready but for now let's begin your training. Today you will work on chakra control until six. From six to nine you will work on physical exercise and from nine to ten you will meditate to work on your patience and ability to stay still. I will create a schedule for you to follow because I won't have much time to train you but when I do I will be training you jutsu or Taijutsu. Now to start on your chakra control I want you to balance a leaf six inches above your fingers until you can do it for a full minute, then add another leaf to another finger and do both at the same time" Itachi ordered.
For the next two hours Naruto was able to balance three leafs on his fingers for a minute before he had to start his physical exercise. Itachi had him running around the training ground non-stop for forty-five minutes. Naruto then had to alternate between doing thirty push-ups and thirty sit-ups for another forty-five minutes. For another forty-five minutes Itachi showed Naruto how to do the real academy Taijutsu style and had him go through the Kata's. Another forty-five minutes after that was Naruto using the academy style against Itachi with Itachi just on the defensive most of the time. For the last hour Itachi showed Naruto how to meditate and allowed Naruto to try it himself. Naruto couldn't stop moving during it so Itachi had Naruto think about something that calms him down and relaxes him. Itachi told Naruto to focus on meditating with that feeling to help him keep still. It only helped slightly though.
By the time Naruto went home he was all sweaty, tired, and full of bruises.
"Man Itachi-sensei is a really tough teacher, but I'm glad I got the chance to become a better shinobi than when I go to the academy" Naruto said as he flopped onto his bed after getting changed into his pajama's and brushing his teeth.
When morning came Naruto felt a whole lot refreshed and didn't notice that all of his bruises were gone. He went about his day a lot more happy and cheerful and couldn't wait till he got to continue his training with Itachi.
When Naruto got to the academy he was on time and he sat in the middle of the room next to a lazy Nara named Shikamaru. Naruto's day was boring as the teacher began to teach the theory part of being a Shinobi along with other common stuff everyone knows like Math and English class (not about learning the language English but about grammar, spelling, and how to read better).
Once again the academy teacher was teaching Naruto the academy Taijutsu style wrong and was helping him in the wrong way but Naruto just went with it. By the end of the day Naruto rushed off towards the training grounds Itachi brought him to. When he arrived he saw Itachi appear in his special crow shunshin.
"So what are we doing today Itachi-sensei?" Naruto asked in an excited tone.
"We will be working on the same things we did yesterday but for the chakra control training, once you have gotten five leaves floating above your fingers then I will teach you the tree walking exercise. Also here is the schedule you will be working on for the next couple months. As I won't be able to train you for the rest of the week you will have to work on the stuff on your own" Itachi explained as he handed Naruto the schedule.
Naruto grabbed the paper and started reading it.
Sunday:
6:00a.m.-9:00a.m. Reading History, Working on Math, Working on English.
9:00a.m.-12:00p.m. Chakra Control
12:00p.m.-3:00p.m. Working on Kunai and Shuriken throwing
3:00p.m.-6:00p.m. Physical Workout
6:00p.m.-7:00p.m. Jutsu Practice
7:00p.m.-9:00p.m. Taijutsu Training
9:00p.m.-10:00p.m. Meditation
Monday:
6:00a.m.-7:40a.m. Reading History, Working on Math, Working on English.
7:40a.m.-3:30p.m. Getting Ready for the academy/Going to the academy
4:00p.m.-5:00p.m. Chakra Control
5:00p.m-6:00p.m. Jutsu Practice
6:00p.m.-9:00p.m. Physical Workout/Taijutsu Practice
9:00p.m.-10:00p.m. Meditation
Tuesday:
6:00a.m.-7:40a.m. Reading History, Working on Math, Working on English.
7:40a.m.-3:30p.m. Getting Ready for the academy/Going to the academy
4:00p.m.-6:00p.m. Chakra Control
6:00p.m.-9:00p.m. Physical Workout/Taijutsu Practice
9:00p.m.-10:00p.m. Meditation
Wednesday:
6:00a.m.-7:40a.m. Reading History, Working on Math, Working on English.
7:40a.m.-3:30p.m. Getting Ready for the academy/Going to the academy
4:00p.m.-5:00p.m. Chakra Control
5:00p.m-6:00p.m. Jutsu Practice
6:00p.m.-9:00p.m. Physical Workout/Taijutsu Practice
9:00p.m.-10:00p.m. Meditation
Thursday:
6:00a.m.-7:40a.m. Reading History, Working on Math, Working on English.
7:40a.m.-3:30p.m. Getting Ready for the academy/Going to the academy
4:00p.m.-6:00p.m. Chakra Control
6:00p.m.-9:00p.m. Physical Workout/Taijutsu Practice
9:00p.m.-10:00p.m. Meditation
Friday:
6:00a.m.-7:40a.m. Reading History, Working on Math, Working on English.
7:40a.m.-3:30p.m. Getting Ready for the academy/Going to the academy
4:00p.m.-5:00p.m. Chakra Control
5:00p.m-6:00p.m. Jutsu Practice
6:00p.m.-9:00p.m. Physical Workout/Taijutsu Practice
9:00p.m.-10:00p.m. Meditation
Saturday:
6:00a.m.-9:00a.m. Reading History, Working on Math, Working on English.
9:00a.m.-12:00p.m. Chakra Control
12:00p.m.-3:00p.m. Working on Kunai and Shuriken throwing
3:00p.m.-6:00p.m. Physical Workout
6:00p.m.-7:00p.m. Jutsu Practice
7:00p.m.-9:00p.m. Taijutsu Training
9:00p.m.-10:00p.m. Meditation
The entire schedule was basically the same but alternated between one hour of chakra control and one hour of Jutsu Practice with two hours of chakra control and no Jutsu Practice. After reading the schedule Naruto got to work on his training. Once Naruto was done with the leaf floating exercise Itachi taught him the tree climbing exercise. During Taijutsu Practice Itachi took the time to show Naruto how to throw Kunai and Shuriken along with how to do the Substitution jutsu and the Henge jutsu. By the end of the day Naruto was once again tired and full of bruises but still happy about his training.
The next day after the academy Naruto went to go follow his schedule but since Itachi wasn't there he went to the new training grounds he found when he activated his Sharingan. It only took Naruto twenty minutes to get to the training grounds under the forest while running instead of walking and arriving in an hour.
During the week Naruto would follow the schedule every time. During the time he got to practice Jutsu he practiced the ones Itachi showed him which didn't take him that long to learn. He went to the library and was looking through the jutsu it had on non-elemental. He found an interesting Bunshin jutsu called Kage Bunshin. It allows the user to split its chakra into even amounts among the clones made to make solid clones instead of just illusions. Another great part about it was that it allowed the user to gain the memories after the clones dispel. The downside to it was it needed a bunch of chakra, but Naruto didn't need to worry about that since he could make around a hundred clones without getting tired. After spending two Jutsu Practice training periods to learn the jutsu, Naruto used it to help him master the Substitution and Henge jutsu.
For the next two months Naruto would follow the schedule and while Itachi wasn't teaching him he would go to his training ground and after skipping training for two days Naruto managed to clean up the place. Naruto put the babies into a storage scroll he found laying around and he left it on the desk of sleeping Chunin who were on guard duty and had it sent to the Hokage. He had a note with it as well saying they were found in an underground hideout. To say the village was busy the next day would be an understatement as the Hokage sent out teams to find the base and find the person who sent in the scroll. The aged Hokage had recognized some of the babies from missing persons reports and he had the hospital look at the DNA of the babies to find out who the parents were. Hiruzen guessed it was one of his students, Orochimaru that used the base.
Two Months Since Naruto started training under Itachi
Itachi was currently getting ready to train Naruto as he grabbed some scrolls he wanted Naruto to read over. Today was the day he was going to start training Naruto in using the Sharingan. As he gathered his stuff he thought of Naruto's progress. 'Naruto's training is going really well. For a six year old who just started the academy he could probably already fight a twelve year old and come out in a tie. Even though a twelve year old is still in the academy and aren't that strong, someone of Naruto's age cannot hope to match them unless they had training like Naruto.
Itachi walked through the kitchen in the early morning on Saturday. He was going to change Naruto's schedule some more so he could teach him how to use the Sharingan. The schedule was only there to help get Naruto a start on training but now since it has been two months he would take away the schedule and let Naruto train in what he needs to. As he was pouring a glass of orange juice his mother Mikoto Uchiha walked in.
"Oh good morning Itachi-kun! Are you heading out again?" Mikoto asked.
"Yes Kaa-chan. I will be out all day so you don't have to bother making me any lunch as I will just go to the village to eat" he stated.
"Oh alright. Have a nice day ok Itachi-kun" she said as Itachi nodded and went out the door.
'Your father and I have been suspicious of where you go now a days Itachi-kun. I might as well follow you to make sure your not doing anything bad' Mikoto thought as she got on her shoes and followed Itachi while suppressing her chakra. She was a former elite Jonin after all, so she could follow after her own son that only did just start Anbu.
At the Training Ground
Once Itachi appeared on the training ground he had his back to the tree's in which Mikoto was hiding in with her Sharingan activated.
'Who is he waiting for?" she thought
It was then Naruto ran onto the training ground and went up to Itachi. She was surprised to see that Itachi was training Naruto from what she got out of reading Naruto's lips when he greeted Itachi with a 'Itachi-sensei'.
With Naruto and Itachi
"Ok today Naruto I'm going to train you how to use your Sharingan. First you should understand that the Sharingan is a tool and weapon, and it is not what makes you powerful as it is the wielder that makes the Sharingan powerful. Do you understand me so far?" he asked getting a yes from Naruto.
"Ok first thing you should do is channel some chakra into your eyes and activate them. The way you deactivate them is to just stop channeling chakra into your eyes" he explained.
Naruto just nodded and started channeling chakra into his eyes. Naruto's sky blue eyes bled into blood red with one tomoe in each eye. Once finished both Itachi and Naruto heard a small gasp in the tree's behind Itachi.
Itachi turned around and called out "Come out now, we know you are there!"
Mikoto jumped out of the tree's and landed in front of the two. Itachi had a face of shock while Naruto had a face of confusion.
It was Naruto who spoke first. "Who are you pretty lady?" Naruto asked with a tilt of his head signaling his confusion.
Mikoto faced Naruto and looked down and patted his head. "I'm Mikoto Uchiha and I'm Itachi's mother, my young Uchiha".
Chapter End!
Thanks for reading this chapter. I enjoyed writing this chapter and I hope I wrote Itachi in a similar way he might actually act. I must warn you that I might not update that often but I most certainly will try. I have finals this week so I won't get to write that much but hopefully I can write another chapter soon. While Itachi is teaching Naruto Mikoto might help sometimes but she will NOT be a mother figure for Naruto.
Next chapter
The Mother, Sharingan Training, Troubles