The final fight!

Hello again my fellow readers and here's the final chapter of the story I hope you enjoy it.

Disclaimers: I own nothing

Last time Konoha became a battlefield between Cobra and its allies against the civilian council, the shinobi elders, Danzo Shimura and root anbu. This was Konoha last day of existence, after the battle Cobra commander orders it's destruction with used of the Zeus cannon. Konoha was nothing but a crater filled with rubble. Meanwhile outside Cobra command a man name Madara Uchiha is on his way there to face Cobra commander which he knows is Naruto Uzumaki Namikaze, the final fight is about to begin.

Cobra command

A cobra battle android trooper notice Madara Uchiha is coming so he decided to alert Cobra commander.

"Cobra commander", the battle android trooper called him.

"What is it?"

"Madara Uchiha is coming." Everyone including Hashirama and Tobirama went wide eye.

"I know why, he is here to face me and kill me. I will face him alone", Cobra commander said but Kushina is willing to object with that.

"Naruto his dangerous don't go, don't leave your parents or Shizuka." Kushina said with tears streaming down her eyes.

Cobra commander turns around to see Shizuka is having the same thing. So he gives his mom and dad a hug then gives Shizuka a hug and then they kiss.

"I shall return", Cobra commander said as he leaves his throne room.

"We should watch this final fight", Firefly said as he orders some cobra troopers to open a channel.

Outside

Madara just arrive only to see Cobra commander standing in front of him outside the gate.

"So Madara you finally come", he said with a smirk under his helmet.

"I know who you are Cobra commander you are Naruto Uzumaki Namikaze son of Minato and Kushina Uzumaki Namikaze." Madara said holding his Gunbai.

"Now you know who you're fighting", Cobra commander said removing his helmet then putting it back on.

Madara notice Naruto's hair is black now but decides not to talk about and prepares for his battle with Naruto.

"Once I kill you I will rule by war and destruction like should have before but I was defeated by Hashirama." Madara said and explains.

"I do know Obito who took your identity and use Kyuubi to attack and destroy Konoha which is order by you but it failed", Cobra commander said to him with his sword on his hand.

"He would succeed on his mission and killing your mother only if Serpentor hadn't interfered." Madara said with an angry tone, he may apparently blames Serpentor for the failed attempt on destroying Konoha and killing Minato and Kushina.

"Alright that's enough talked let's get this over with", Cobra commander said to him now they are ready to fight.

"Gunbai Fanned Wind", Madara then swings his Gunbai blowing a big gust of wind and Cobra commander went flying into a wall which was a very hard hit.

Cobra commander attempts to get up but gets hit by Madara's great fireball technique. Luckily he manages to survive that since he manages to roll out the way but he feels the burns from it.

Cobra commander then used his limbo hole technique to suck Madara's gunbai fanned wind into another locations. Cobra commander then use demon flash and kick Madara from behind making him trip and fall. Then Cobra commander comes out of warp holes.

"Bring it Namikaze", Madara said after getting up and start using his gunbai like its sword so he and Cobra commander do a sword fight.

Madara isn't using his sharingan on him because he knows Cobra commander can't see it, not with his helmet on. As their sword fight continues Cobra commanders knocks the gunbai out of Madara's hands. Cobra commander then tries to slash Madara in the gut but misses. Madara kicks Cobra commander's right arm making him drop his sword. Cobra commander spin kicks Madara knocking him into the ground. Madara next throws a fuma shuriken at him, Cobra commander moves out the way but his helmet knocked off his head.

"Hah now you can see my sharingan", now Madara can use his sharingan on Cobra commander.

"Tsukuyomi", Madara said using the tsukuyomi on Cobra commander. This is really going to hurt very much.

(Madara uses Tsukuyomi in manga only)

"Oh no Naruto will be trap in that illusion world", Minato said as Kushina begins to cry on him.

Unknown to them Shizuka just left the throne room, she maybe up to something. Whatever she is doing it might help Cobra commander. Meanwhile Cobra commander becoming in pain do to tsukuyomi even thou it's just an illusion but there is still pain.

In illusion world

Cobra commander finds himself being stab many times and there is no way out of it.

Back at real world

"Haaah hah ha! How those it feel to lose to the first user of the sharingan Naruto? I win this battle and you fall", Madara said with a victory smile on his face.

Madara then walks up to him to finish Cobra commander off with the commander's sword but he is about to get interrupted.

"Madara!" Shizuka called.

Madara turns around, Shizuka then fires Cobra commander's revolver and the bullet hits Madara in the right eye. What happen next this made Madara scream in pain and this freed Cobra commander from the tsukuyomi but is very weak from it.

"Now Naruto finish Madara off while you still have a chance", Shizuka said to Naruto as gets up.

Naruto then is ready to use dark punishment to kill Madara and make sure he stays dead. Naruto creates multiple circles of limbo holes and travels through all of them, after he reaches the acceleration he creates a warp hole prople himself at Madara. Madara screams because this is where he meets his end.

"Dark punshiment", Naruto hits the ground and the place becomes a fogged up area.

Shizuka went to check on Naruto if he is okay eventually as the fog clears she finds Madara's body dead and his blood is everywhere, next to him is Naruto, he's okay.

"Hey Shizuka are you coming here to help me or not?"

Shizuka felt tears coming out of her eyes then ran to him and grab him into hug. Shizuka kiss her lover very deeply, she is very glad that Naruto survive the final battle.

"Naruto oh my sweet Naruto you're alright", Kushina runs to her son and Shizuka moves so Kushina could have her chance to hug him but this was another crushing hug like before but this she avoids breaking his back. Minato also hugs his son but not that crushing one, even Jiraiya and Tsunade did the same thing. Naruto then purges Madara's body leaving no traces of him. After they head back where they find all of the people that Naruto cares about cheering on for his victory, even everyone in Cobra are also cheering.

Cobra command med bay

Naruto is resting in the bed with Shizuka, his parents, godparents and Mito by his side. When he wakes up Hashirama and Tobirama walks up to him and they seemed to be happy.

"You did well Naruto on defeating Madara", Hashirama said which Naruto nods to him.

"So now we have peace, what's next Naruto Namikaze?" Tobirama said and asked.

"We rebuild", Naruto said as he and Shizuka kiss again which everyone in the room smiled.

Epilogue

Journal from a cobra neo viper

After the war ended and the defeat of Madara Uchiha, Naruto/Cobra commander including everyone in Cobra recreated Konoha without any mistakes that were in the village and without things that made Konoha rotten to the core. Since Hashirama was resurrected he returns to the position as the first Hokage. For Itachi Uchiha he became the leader of a recreated Root, a special organization with elite shinobi with unique abilities for protecting the village and his people and this root don't have such mistakes like Danzo's because of Itachi wise ruling of his own root. Sora became leader of the 12 ninja guardians and thanks to the Fire Daimyo accepted New Konoha. Zartan became teacher in Konoha ninja academy. Nagato finally recovered thanks to Naruto/Cobra commander and begins to date Koyuki.

Ryuzetsu/Baroness became leader of the hidden grass village and finally healed her pain because of losing Muku and finally found her love in Zartan who helped her to open her heart and increase military power of the village. Firefly finally defeated Onoki and became the new Tsuchikage, well this battle was incredible hard and he almost died, he did not kill the old man but forces him to understand that Iwagakure needs global changes and accepted him and teaches him Dust release methods.

Konan and Storm shadow create a family years later like Nagato did with Koyuki.

Naruto/Cobra commander then destroys the nanomites with the Zeus cannon along everything that could create them and recreated them because he fears if anyone got their hands on them it could bring chaos in the future. Hashirama became leader of the united elemental nation alliance because of his power and wise. Naruto/Cobra commander admit that he can't defeat Hashirama if it was fair or unfair battle. Naruto/Cobra commander became his advisor in hope to escape wrong ways.

For Naruto/Cobra commander he became leader alliance countries which Cobra includes: Snow country, Wave country, Takumi village and its own country, Rain country (Leader of village is Nagato) and sky village which will be leaded by Destro.

Naruto/Cobra commander and Shizuka now live together in Nadeshiko village to be together and begin their own family and his command chair was moved there. His parents and godparents remain in new Konoha to help everybody there but keeps in touch with Naruto/Cobra commander and Shizuka. I do know Naruto wanted to be Hokage of Konoha, but to everyone in Cobra he is Hokage.

End of the journal

After finishing the journal the neo viper leaves the house he is staying in and brings his pulse rifle with him. He takes a walk in the new Konoha and sees the flag of Konoha and Cobra next to it. He smiles under his helmet and salutes to both it.

The end

Well that it I hope you enjoy reading this fanfiction story. Now can go back doing Vector's past returns. I thank Tsunashi777 for all the ideas he gave me.