Disclaimer: I do not own Neon Evangelion Genesis or Neon Genesis Evangelion: Campus Apocalypse, they belong solely to their rightful owners.

Warnings: This story will be YAOI, ShinjixKaworu. It you do not like DO NOT read. This warning is for your own good and mine if you do not like BoyxBoy goodness! Also the characters will be OOC so, once again, if you do not appreciate this then DO NOT read!

Author's Note: Be aware that I did change the Timeline around to accommodate my ideas for the story. So ages will be different. Events will also be different. This story will also have only elements of Campus Apocalypse, so sorry for those who wanted the EVA units in this story.

Evangelion: Angel's Egg

Launch 001: The Beginning

Year 1997

Gendo Ikari watched in Horror as his Yui struggled to give birth to their son. She thrashed in the arms of nurses who tried to hold her down. They could not sedate her for fear that the child would be lost and so the Doctor had to struggle to get the child out. A C-section was out as Yui was already too injured to cut her open. Just hours ago they had been attacked by an ANGEL. Yui had been caught in the cross fire and engulfed in the ANGELs light as it was destroyed.

Gendo and the team were shocked to see Yui still alive when the light vanished, but she was not unscathed. Her body was covered in what looked like black soot on her arms, legs and forehead, it seemed to spread throughout her entire body, and she scratched at the blotches as if she were beings burned from the inside out.

They were also amazed to find her in labor.

The cries of a baby echoed in the room and Gendo watched as his son was taken from between Yui's legs. He stared in horror as the child was placed in his arms, back blotches covering his entire body.

• • •

Year 2000

Yui Ikari watched her son as he skipped along side his father, who was smiling down at the child. Gendo was glad that Yui and his child had survived the birth, but sometimes he wished they had not. Their condition, their Geo-stigma, was like Cancer. It pained him to see them in pain, and suffering. He had tried desperately to get Yui to stop her tests on the Evangelion project but she refused. She did not even flinch when he said how if she died Shinji would be sad. She only countered by saying that she did not want to see her child die at the hands of the ANGELs.

Stepping into the lab's control system Gendo grinned at the man approaching them.

"Katsuragi" he greeted him, holding out his hand.

The man smiled, "Dr. Ikari glad you could make it!"

Gendo was startled to be drawn into a bear hug, instead of a handshake before he was released.

"This is it Ikari, the breakthrough for mankind, when this succeeds-"

"If" interrupted Gendo as he peeked at his wife and son who were shedding their winter coats and giving them to a scientist who was happy to take them.

Katsuragi looked at him seriously, "I assure you, Gendo, everything will be fine."

Gendo just gave a hesitant sigh and did not react to the man patting him on the shoulder before walking away. Turning to his wife who was kneeling down in front of their son, he felt a shudder of something wrong pouring into his veins.

"Mommy has to go in here, so you stay with daddy and watch Mommy, okay?"

Shinji nodded, smiling up at his mother, "Yes, mommy."

Yui gave little Shinji a kiss on the cheek and then stood and walked to her husband. Smiling at him, as if to give Gendo some comfort, she kissed him.

"See you soon."

Gendo watched as Yui weakly entered the testing room, his eyes watching her every movement. He walked over to Shinji and picked him up before joining Katsuragi at the controls.

They all watched from the large glass view window of the control room as Yui was hooked onto numerous machines by the three scientists in the room, who talked with her as they did their procedures.

Gendo frowned at the need to restrain her, but he guessed it was just a precaution.

Another scientist then entered the room through the vault door that separated the testing room from the controls. In his hands he held a white rectangular box. Walking over to the single table in the room, beside the testing chair, he set it down softly.

Opening to the box, steam swept out with hiss. Once it was cleared a single syringe was revealed to be inside, filled with an amber orange solution. Carefully lifting it out with his gloved hands the man held it up and let a bit of the liquid with drip out before gently flicking it a few times.

'Please be safe' thought Gendo as he held Shinji closer to his chest, watching as his wife was injected with the liquid.

He frowned when Yui looked at the scientist and motioned him closer. She was whispering something to him for a few seconds and the man looked a bit uncertain before Yui seemed to urge him on. He hesitated before nodding. Yui looked from him to the class window, right at Gendo and Shinji, smiling that Mona Lisa smile she always used when not even she knew the outcome of something.

Seconds later she was alone in the room.

"Connecting with EVANGELION mainframe…connection acquired."

"Test Subject is Approaching Critical Point."

"Synch ratio at 50% and rising!"

"Synch ratio now climbing…56%...68%...80%...100%!"

"Wait…Synch ratio still rising!"

"Daddy?" asked Shinji as he noticed his mommy looked like she was in pain and wanted to know why. The scientists around them were beginning to get frantic, nearly panicking.

"440%...500%...approaching EGO border line!"

"900%! EGO BORDER LINE PASSED."

"TEST SUBJECT'S PUSLE IS ERATIC, WE ARE LOOSING HER!"

Gendo watched as Yui's body seemed to be covered by the darkness of her Geo- stigma, encasing every inch of her skin in blackness. Her hair was melting into white and, from what they could see her eyes were flashing crimson.

Gendo set Shinji down and ran for the door to the room, trying to pry it open. He then noticed that it had been locked from the inside.

"YUI!"

He banged repeatedly on the door, crying out for his wife desperately. Shinji stared into the room and watched as his mother began to thrash about in the testing chair she was hooked up to, like a raging, ravenous animal.

Gendo beat on the door once more before turning and running to Katsuragi who was glaring into the room at the black form of what was once Yui Ikari.

"Open the door!" demanded Ikari to the man.

Katsuragi turned to him, "We cannot, we can't let her escape."

Gendo growled, baring his teeth, and sized the man by the collar, "You're killing her!"

Suddenly a roar spilt the air and echoed to them like a sinister omen.

Both men looked over to the window to see, not Yui, but a monster looking dead at them. It ripped away the restraints on its wrists and ankles and flipping up onto the head of the chair, balancing itself like a crouched feline. It jerked about like a broken doll and seemed to be surrounded by a static field as it phased in and out of focus.

Then, in a mere split second a crash banged against the window, shattering it but not breaking it. The thing standing right there with its hands on the broken glass.

"A BREACH HAS OCCURED. STARTING DATA BACK UP! ALL PERSONEL ARE ADVISED TO EVACUATE THE FACILITY IMMEDIENTLY!"

Everyone began to rush to their feet and hurried out of the room as the computerized voice repeated the announcement, a few remaining to finish the data back up.

Gendo ran to the glass and placed his hands on it, "Yui, Yui!"

The thing just stared at him through the glass, its sharp mouth of fangs dripping with saliva, its clawed hands screeching along the glass as it ran its nails over it. Its puffs of exhaled breath fogged.

Gendo then noticed a movement to his left and turned his head to find Katsuragi messing with a console. He frowned as a square section of it slit open to reveal a red button and a 12 digit code panel

"COMMENCING EXTRACTION OF ALL INFECTED, PLEASE INITIATE COMMAND CODE."

"Katsuragi, what do you thing you are doing!"

The man just punched in a code on the panel and reached for the button.

"No!" cried Gendo as he ran at the man but was seized from behind by two men that had remained.

Katsuragi looked at him, "I'm sorry, Ikari, but I have a daughter here in the facility, and everyone else I am held accountable for…I'm sorry," he looked over to Shinji who was looking past the glass with a look only a child would possess when they did not know what was going on. Closing his eyes he hesitantly pushed the button.

Eruptions rang out in the testing room, an inhuman screech of pain singing to them as flashes of bullets fired lit up the room beyond them.

"TEST SUBJECT LIFE SIGNS…INVALID…."

Gendo gasped in horror and disbelief, sinking to his knees like a crumbling doll that lost the interest of a three year old, out of the two scientists' hold. Staring at the result of a project worked on for years, now the point of his misery.

As for Shinji, the child's eyes were laying witness to the slathered red sea, coating every inch of the room, which was once his mother.

• • •

When Gendo woke up he was surrounded by rubble and bent metal. But the one thing that his mind alerted him to was that Shinji was no where near him. He coughed up blood and looked around for his child. Grunting out in pain as he moved against the building remains trapping both his legs.

"SHINJI! SHINJI!" he called out, his heart sinking at the thought that he had lost his only child as well, just minutes after his wife, "SHIN-!"

His eyes widened at the sight before him, throat collapsing on the rest of his son's name.

There was his son…hovering in the air, golden brittle things, that looked like the bone of what were once wings, sprouting from his back. The sky was painted crimson and amongst the sky…ANGELs flew freely.

"SHINJI!"

A bright light flared to life and engulfed him into a dark abyss

Here is the revised chapter, and if it is still to vague then I will explain later what is going on! Yes it is dull, but it will get better later on. Please review and tell me what you think, and thanks for reading.

Sayonara!