Author's note:

Before everything gets started, let me lay down the My Little Pony equivalents for the main characters of Code Geass:

Lelouch- Twilight Sparkle

Nunnally- Fluttershy

Suzaku- Applejack

Kallen- Rainbow Dash

CC- Rarity

Don't worry, Pinkie Pie will be in this story, but she will follow a unique path. This story won't just be a carbon copy of Code Geass with ponies instead of humans, I will try my best to really play with the topic and bring enjoyment to my readers as well as myself. Keep in mind that whatever happened in My Little Pony: Friendship is Magic is still canon here and occurred in the past. Without further ado, enjoy!

Chapter 1: Awakening to the Memories

"Hey! Wake up, Twilight!" A familiar voice called out to Twilight Sparkle.

Twilight opened her eyes to see her purple pet dragon, Spike, in front of her bed.

"Wha- what is it, Spike?" The still sleepy Twilight asked.

"Don't you remember? Today is the first day of Magic Reinforcement School! Honestly, Twilight!" Spike retorted.

"Th- that's today!" Twilight was instantly alert.

"I see my work here is done. Come get your breakfast when you're done brushing your hair or… whatever girls do in the morning." Spike said as he left the room.

Twilight Sparkle simply stared up at the ceiling in deep thought.

"So… it's today, is it?" Twilight asked herself.

Twilight thought about how she would finally get to see her old friends again. How she missed the old days, where friendship truly was the strongest magic. Nowadays, however, she was not sure if that was so. After all, friendship couldn't prevent the tragedy that had happened. Twilight thought to herself, as she got up, brushed her hair, and made other preparations…

(It all started as a normal day. The pegasi, that is the plural form of pegasus, were all busy clearing out the clouds while everyone else was at their jobs. Rarity was at her boutique, Applejack was jacking apples, Fluttershy was soothing the small animals of the forest, and Pinkie Pie was baking cupcakes. I was researching where to get eternity salt for spell twenty-two.

But then, after all the hard work of the pegasi, the clouds came back. But this time, they weren't normal clouds. They were pitch black clouds conjured by magic. The pegasi tried to fight off the clouds, but to no avail. The clouds blocked any escape and had brought Nightmare Moon's army with it. The leader of the army was the Princess of Midnight herself in all her former glory. By instinct I joined up with Rainbow Dash, Rarity, Applejack, Pinkie Pie, and Fluttershy.

We courageously marched forward, seeking to dispel Nightmare Moon with our Elements of Harmony; even Fluttershy was courageous. There were several flashes of light, but then… nothing. Everyone panicked a little. Then, Rainbow Dash charged at Nightmare Moon, dodging her at the last moment to fight off her army. I fought with all my best spells. Princess Celestia herself soon arrived at the scene and fought Nightmare Moon with legendary spells I always thought were just myths.

In the end, it all failed. I had the burden of watching my teacher Princess Celestia murdered before my very eyes. The battle all went downhill from there. I got knocked out somehow… just to wake up in a fancy room inside a castle that Nightmare Moon had built. She… told me horrible things. She told me that I was technically a citizen of hers because I was a foreigner. Worst of all, she told me… that she was my mother and I was born among the stars with her. She said that she could have killed me for betrayal, but I was such a powerful magician that I could choose to join her army with the rank of a "knight". I refused, and she banished me here: New Fillydelphia.

As time went on, I recovered from these events the same way I've recovered from everything painful in my life; I stayed alone and distracted myself with books. I was only able to hold on to my dragon Spike and Fluttershy, but that's a long story. Hey, wait a minute…)

"Fluttershy!" Twilight exclaimed as she raced to the dining room where Spike was seated at the breakfast table.

"Hey, what's wrong, Twi-" But Spike was interrupted.

"Fluttershy! Did you remember to wake her up? Tell me you did!" Twilight was red with worry.

"Don't get so flustered; Fluttershy is excluded from this Magic School thing."

"How do you know that?"

"She told me herself. She's awake, you know."

"What! Then bring her here for breakfast!" Twilight had burst into flame in frustration.

"Y-Yes! I will!" Spike said as he shot out the door.

Twilight stared at the front door that Spike had left out of for a while before saying:

"…I'm sorry, Spike. I'm just worried about Fluttershy."

"Oh, but I'm okay, Twilight. Really." A familiar voice answered.

Fluttershy and Spike entered the room at this time.

"Fluttershy! How'd you sleep?" Twilight asked.

"Oh, it was a good night." The timid Fluttershy answered.

"Do you want some breakfast? We have Pony Charms cereal." Twilight offered.

"Um, well, since Spike brought me here before I could eat my own cereal, I will. That is, if it's not a problem…"

"Good! Have a seat here," Twilight said as she pulled up a chair for Fluttershy. "While I prepare you a bowl."

"Okay. Don't work too much, though." Fluttershy responded.

Twilight Sparkle truly was a genius. No matter what the task, she always was able to spare some of her mind for deep thought. Even in the early morning before school, as she was preparing Fluttershy's cereal, she still thought…

(Lately I wonder if I obsess over Fluttershy. I mean, perhaps she can take care of herself. The times where she told off that giant red dragon and where she saved me- as well as Applebloom and her two filly friends- from that cockatrice, have shown that. But I can't help but worry about her. She must have taken what happened in the past hard. But thank goodness she doesn't have to go to this Magic Reinforcement School fraud! Oh, that's right…)

"Oh, Fluttershy? Why were you excluded from the Magic Reinforcement School?" Twilight asked out of concern and curiosity.

"Oh, yeah! I was wondering that too, but I almost forgot!" Spike piped in.

"Um, the answer is… I don't really know. I just got an official letter in the mail, and I don't want to disobey it and show up uninvited. That might offend people." Fluttershy answered.

"Hmm. Well, be glad you're spared from it. Now," Twilight said as she brought a bowl of cereal to Fluttershy. "Let's just enjoy our meal. That sound good?"

"Yes. Thank you." Fluttershy stated as everyone dug into their food.

"Oh, no!" Spike exclaimed.

"What's wrong, Spike?" Twilight Sparkle asked.

"I forgot to buy some cubic zirconia for my cereal!"

"…Seriously?" Twilight asked in disbelief.

"Yes! I simply need diamonds in the morning, and cubic zirconia is the only way to affordably do that!"

"Well, you must simply go without for now!" Twilight ended the whole line of conversation for the topic.

"…So when are you guys gonna use Geass and go do crazy stuff?" Spike randomly asked.

"What?" Twilight and Fluttershy asked in unison.

"Nothing…"

Author's note:

And that's Code Pony: Twilight of the Rebellion Chapter One. It's actually pretty hard to make sure that the whole Code Geass aspect fits in to the My Little Pony: Friendship is Magic universe. Please, please, PLEASE comment! :)