Prototype Fox.

A/N: This is just to get my mind refresh. Note you need to beat the game to get a full understanding of it.

Now if you have beaten it. The ending where Mercer is the Zues (trying not to put spoilers) then this won't happen in this story. Sorry it doesn't fit for me. Also THERE WILL BE NO GUNS OR MODERN THINGS IN THIS STORY.

$$$$$$$Memory of Intrigue

******* monologue

Exactly Three thousand four hundred and twenty two miles away from Konoha lay an outpost. Outside the outpost looked like a fortress. There were erected mud walls all around with spikes on the bottom of each just incase someone tried to climb them. 7-10 guards swarmed the roof while even more swarmed outside the wall. Inside was masked men and doctors. All of them working, none of them talking. No one bothered with small talk … since they didn't understand it.

These men had no emotions they had no feelings. Their operation here was to study and observe their subject Code: Zeus. They had injected it into a subject they believe able to handle the affects and study it.

The subject was on a gray morgue table ready to be dissected. They were sure the virus had killed the host and they would proceed to opening and examining.

At the time there was only one doctor in the room and 2 guards outside the room. They were more worried about someone trying to get in then getting out.

Subject's point of view.

'Uggh … where …. Where am I … who … am I …'

The subject opened his eyes to see a doctor looking at files to his left. He was on a grey metal table and there were knives all around him. The subject got slowly.

The doctor turned around and gasped. "What the—"

The subject made his move and wrapped his hands around the man's throat. He squeezed and the man's throat snapped like a stick. Immediately tentacles both black and red came out and grabbed the man. It pulled it towards the subject. The doctor's corpse broke down into particles went into the man. All that was left was blood stains The subject fell to his knees clutching his head in pain…

"Uzumaki Naruto Code Zues. Gennin of Konoha"

"… we have chosen him to be injected …"

"… we are anbu root…"

Naruto gasped. He had all this man's memories, every segment and detail. He had to get out he had to escape. According to his new memories he would be checked up on in 20 minutes.

'If I remember correctly this virus should have changed me…'

For that 20 minutes he experimented and was only able to do two things.

The anbu root came in. He surveyed the scene and immediately he went to the doctor on the floor. He quickly checked his pulse to find that it was strong. He quickly cast a Awakening Jutsu and waited for the man to wake up. The doctor got slowly.

"uggh what…. The SUBJECT!!"

The anbu root grabbed the man "What happened to subject Zues"

The doctor man's eyes started shifting everywhere "H-he wasn't dead and he woke up and almost." The doctor clutched his head.

The anbu root blinked and turned around. He wouldn't be able to get anything like this so he would chase alert the others and chase after Zues.

Suddenly he was grabbed from behind. His mouth covered and a knife sticking through his throat. 'W-what' and with that the anbu root died being absorbed into the doctor. Naruto shook his head once again at the pain.

" … Guard the door…"

"… You take orders from me I take my orders from someone else and so on until we reach whoever is our boss."

"… Learn this remember … Do not complain we are Root we don't have emotions."

'I know it all' Every jutsu , every technique, he knew them all. Quickly focusing his mind on the Anbu Root's persona he changed. He left quietly not wanting to alert anyone. It would take at least 40 minutes for someone to know what was wrong.

Naruto moved quickly to the restroom. He sat there slowing his breathing and going through the layout in his head. Luckily all these Anbu Root knew the whole entire layout. They also knew each others position. The problem was is that he couldn't simply walk out because they were too many guards and it would immediately cause suspicion. 'Damn I need to make a distraction.' Naruto went through his head and devised a plan to get out. 'I'll have to sacrifice stealth for chaos.'

Getting out of the bathroom Naruto quickly moved.

He down 4 hallways and 2 corridors (funny are they the same thing.). Finally stopping at a door, he knocked and walked in. He saw a man faced away from him bending down looking at a scroll. This man was his commanding officer. Naruto walked towards this man's commanding officer and saluted by bowing his head.

The commanding officer did not return the gesture but simply said "what is it."

Naruto quickly reported that the doctor was dead and that teams were swarming the building and guarding the outside tightly. The commanding officer nodded and took out a scroll. Naruto made his move. He quickly smashed hand through the body of the officer snapping the spine the Anbu Root commander died quickly. The tentacles came out again and absorbed the man.

"… Danzo has ordered us to guard this area…"

"… Danzo will only be met by his trusted commanders.."

"… Konoha will benefit even if they don't know it…"

'Hmmm…' Naruto contemplated his memories. He knew how to escape and what he should bring. He also knew his target. Danzo. Sadly he didn't know where he was. 'I'll find him and make him tell me what he did to me.'

Naruto snapped out of his thoughts and immediately went the locker to the right of the desk. He opened it to see Anbu armor and weapons of all sorts. Naruto didn't care for the armor but instead took a tanto and lots of shurikens. He also took a back pack that laid to his left. According to his memories it contained emergency provisions and explosion notes. He picked it up, transformed into the Anbu commander and went to the other side of the room. There he pressed a crack and pushed forward. The crack moved forward and immediately the cracks of a door next to the closet could be scene. Naruto pushed the door and walked through it. Outside was a very long underground corridor leading to the outside somewhere in the Stone country.

In his mind he already had his journey mapped out. He would start in the Stone village, work his way to the Cloud. Then take either a boat to wave and finally back to Konoha then sand.

Naruto ran off extremely fast. If his senses that he had obtained through his memories were correct he was running a little aboce 100 mph without any chakra. About halfway through the corridor he slapped an explosion note and took of once again.

The journey took him only 2 hours due to his speed and constant pace. Immediately he set of his explosion note and destroyed the corridor. The reason he put it halfway was because the halfway point was under a mountain it would destroy most of the corridor.

The only bad part of it was they would know where he was going. Naruto moved quickly through the hills. He had turned back into his regular form so that he wouldn't spook anyone that Konoha was here. He finally saw a group of travelers. Quietly he moved behind a straggler and killed him and absorbed him. Taking the pack that was now his, he quickly put his other back pack in it.

"Hey Goro Hurry up ya hear" Naruto immediately responded.

"Yea yea Hiro I'm coming" Naruto started running at a civilian pace. He caught up with the travelers in no time. For the next week Naruto played the part of a Goro and when they reached the Great Stone Village he quietly disappeared.

In the backstreets he stole some money and went into a shop to buy some clothes. He bought black cargo pants, a red t-shirt, and a black jacket with a grey hood. He took his back pack and started to walk out when he heard something very interesting. He immediately jumped up a roof and sat down to listen carefully to a conversation.

A man weathered looking man was talking to a white spikey haired man with a large scroll on the back. He listened intently from at least a mile away.

"—Uzumaki Naruto is probably in Danzo's hands that's all I can tell you right now… we need to get to a safe place."

'Interesting is someone looking for me maybe I can …. NO! that would be bad I'll figure this out on my own. But first I think that informant can help me." The older man left quickly in the direction Naruto came from.

After 5 minutes Naruto jumped down in a small alley and proceeded to walk into the store across the street. He waited for the informant to finish his drinks and leave

Naruto moved quietly following the man through the crowd near the side so he wouldn't get caught. He never looked at him so no one would guess he was following him. When the man turned the corner supposedly to go through a secret entrance, Naruto made his move. He quickly rushed towards the man grabbing him by the scurf of the neck and dragged him further down the alley. He slammed the poor informant into the wall and used his forearm to pin him against the wall.

Naruto stared in his eyes for 2 seconds than growled his question.

"Tell me everything about Danzo."

The informant looked at the young man's eyes. He knew his decision. He wouldn't tell … he couldn't tell.

"No."

Naruto bowed his head. "Good bye." Naruto smashed left hand into the man's face. Creating cracks along the wall. Naruto then picked up the man slammed against the ground used his right to smash through his stomach. The tentacles absorbed him and Naruto shook his head at the pain.

"…so he's not human … he's a Jinchuuriki this Uzumaki."

"… I don't know where but I know where I can find out.."

"… The Akatsuki are hunting Jinchuuriki most likely to use the bijuus."

"… I have an informant in kumo where I can get some info…"

Naruto took a deep breath in. He walked into an in. He paid for his room and slept.

******

I wasn't human. Or at least I wasn't the regular human. I had a freakin demon in me.

I part of me was relieved … part of me died. I knew I couldn't go back … to where ever I was like. I wasn't the same as everyone else …. I couldn't lead a regular life.

I was relieved to know I was so much more. I had more power. According to my memories I had THE STRONGEST BIJUU. That would be an asset. I wasn't human no but I was so much more.

What was more was this Akatsuki. They were hunting me or at least those of my kind. I wouldn't let that happen. Not on my watch, I would hunt this Akatsuki down while searching for Danzo.

Now all I needed to do was contact my Bijuu.

******

Naruto woke up at four o'clock. Naruto simply got up and got a glass of water. He drank the contents and settled in a cross legged position on the floor. He didn't know much but he did have a theory to meditate and contact his bijuu.

He relaxed his body and cleared his thoughts. While doing so he collected his chakra into his center.

Seconds becames minutes and minutes became hours. And finally Naruto opened his eyes to see a sewer like area. 'Hmph this is my mind.' Naruto walked forward to explore the corridor. He found a door to his left and walked towards it. Inside he found a huge gate but instead of a lock there was a paper with the kanji seal on it.

'So this is the sealed area.'

Naruto walked forward but involuntarily took a step back from the Killer intent washing over him. Naruto shook his head and cleared his throat "Is that how you great your container."

A red slitted eye appeared in the darkness. "Bah even if he forgets his memories he still is a cheeky brat."

Naruto glared right back at him. "I like to make a deal with you."

Naruto heard deep rumbling and passed it off as a chuckle.

"If you come to offer me freedom sorry you can't… only a seals master can… but I do know what you can do for me."

Naruto raised an eyebrow "Name it"

"Kill Uchia Madara."

'Another person on my hit list.'

"Who is he."

"He is the one that controlled me and made me get sealed in a flesh bag."

"Fine now about the Akatsuki they are hunting Bijuu how do I deal with this."

"The simplest way is to kill them all. And this will be killing two birds with one stone because Madara is in the Akatsuki."

Naruto nodded in appreciation 'Easier for me'

"So where are they."

"Hell if I know but either way you aren't strong enough yet… you need to train… and gain a team…"

Naruto was silent at this.

"They go in pair… Gaki… You need a team so you can take them down…"

"Where do I find a team."

"Simple just like Bijuus, Jinchuuriki stick together."

"Ok from who should I get."

"Jeez so annoying. You are a wind and fire element. Fire comes from me of course. What I suggest is getting bijuus related from all the rest of the elements."

Because of Naruto's understanding of elements from the Anbu roots, he just nodded.

"Alright where is the closest one."

"In Kumo."

A/N: Now first of all if your going to say that the Kyuubi is too cooperative that ain't it. He is giving a mutual understanding with Naruto. Basically it's a 'I stab your enemies and you stab mine kinda thing.'

I ready have the pairing so no arguing. Also naruto will be returning to Konoha at one time. Finally Naruto does not know his shape shifting claws or hammer fist just yet. I have plan to invite old seals in.