AN: Hello people, Dragon here with an entirely new story for you all. For those that read my other story, I'm not stopping just decided to type up a new story. This, like my other story, will be a Harem story for our favorite blonde shinobi. Yes it's a neglect story though I hope my path makes you all enjoy it. Also Naruto will forgive his parents eventually but it will not be quick nor will Naruto will be completely hateful as time goes on. Well without further adeu, let's begin the story. The harem is as follows:

Hinata (no complaints, I like her)

Fem. Haku

Fem. Sasuke (it's his twin)

Yugito

Samui

Kira (Kiba's twin, not seen this done before so why not)

Nami (Naruto's sister)

Mito (Naruto's other sister)

Cynthia

Anabel

Sabrina

This is all I have for now. More will be added as time goes on, but not too many as I'm not skilled enough for that. If you have a suggestion, I may consider it but no promises it will be used.

Pokemon- Attack

"Pokemon"- The Pokemon speaking (only Naruto understands unless stated otherwise)

"Naruto"- Human speech

'Naruto'- Thinking

Chapter 1:

May the Aura Be with You

"Tou-san, kaa-san, Mito-chan!" came the excited shout of a young girl who looked to be about eight years old. She had red hair that was tied into two short pigtails. She also had deep, clear cerulean blue eyes and a heart shaped face, which possessed three whisker on each cheek. She wore a loose red shirt with an orange toad on the front. Her excitement was due to her feet sticking to the surface of a tree after multiple failures of doing so.

Before anything could be said, a red blur grabbed the young girl from the tree and did two things.

Squeeze her tightly to a point she had trouble breathing and spin her around so fast the young girl thought she would puke.

The red blur was none other than Kushina Uzumaki, the young girls proud mother. "I'm so proud of you dear! You will become a really strong Kunoichi very soon!"

"Your mother is right Nami-chan," came the proud voice of her father, Minato Namikaze, the Yellow Flash and Fourth Hokage of Konoha.

Next to him was another girl that looked to exactly like Nami and also looked to be about eight years old. In fact, the only difference betweem the two was that her hair was tied into a ponytail and instead of blue eyes like her father, she possessed the violet eyes of her mother. This young lady is Mito Uzumaki Namikaze, twin sister of Nami Uzumaki Namikaze.

"Yeah sis, I knew you could do it!" she cheered for her younger twin by 6 seconds. She had got the chakra exercise down yesterday and was waiting for her dear sister so they could advance together.

After finally gaining her balance from her mom's spinning-hug-of-death, Nami grinned at her twin. "Yeah, now we can both continue to get stronger and become super powerful kunoichi."

The family were then seen talking and playing together happily. To anyone looking at this, then it was the epitome of a picture perfect family. A loving and proud father, a caring and slightly overprotective mother, and two close siblings that loved each other dearly.

There was only one problem for this picture; not all members of this 'perfect' family were participating in this loving moment. In fact, the missing family member was watching the whole interaction from a window in the living room.

The person was a young boy who was about a year older than the two twins. He had spikey blonde hair, similar to his father Minato's, with the tips being blood red in color. He had three whisker marks on each cheek, making him look like a fox. His eyes showed that he was hetechrome due to his left being an ocean blue, but his right being a deep violet. He wore an orange jacket (that was wide open) with the trademark spiral of the Uzumaki on the back and a black shirt underneath. He also had red Anbu pants and blue Shinobi sandals.

This young man was Naruto Uzumaki Namikaze, the neglected son of Minato and Kushina.

Naruto was neglected for his younger sisters. This was due to eight years ago, Konoha was attacked by the Kyuubi No Yoko. The powerful Bijuu was forced to attack Konoha by a man who wielded the powerful Sharingan eye of the Uchiha Clan.

Minato fought the masked man and freed the Kyuubi from his grasp with the help of Jiraiya, who had come to check on the birth of the twins at the time (having missed Naruto's birth because of his spy work). The former Third Hokage, along with every available Shinobi, held the Kyuubi off as best they could. The Kyuubi, in his anger (and still slightly hypnotized state) began to charge a Bijuudamma to obliterate Konoha off the map, but due to Minato's appearance and use of his Hiraishin, was able to teleport the attack away from the burning village.

Jiraiya appeared with a Battle Toad and pushed the Kyuubi back before Minato apppeared alongside the Boss Toad, Gamabunta. Together they were able to force Kyuubi away from the village and into a safer place for their battle. The fight was long and difficult and the Kyuubi easily showed why it was the strongest of the Tailed Beasts by not only beating the Boss Toad, but also the Battle Toad Gamaken and tossing Minato and a Sage Mode Jiraiya around like kittens.

Knowing they couldn't win the fight, Minato left to get his daughters and Naruto so he could seal the Kyuubi away once again. After a brief argument with his wife and Tsunade, who was the only reason that Kushina was still alive alonside her blood as an Uzumaki, he teleported back to the battlefield to see Kyuubi defeat another Battle Toad Jiraiya summoned named Gamaken.

Acting quickly, Minato used the Reaper Death Seal and summoned the Shinigami himself to seal the Kyuubi. Thanks to the help of the Death God, the Kyuubi was split into three parts: the Yin chakra (which went into Nami), the Yang chakra (which went into Mito), and the soul (which went into a still confused, but scared Naruto). Due to the soul having so little chakra, Naruto didn't have to worry about a chakra overload.

Ready to have his soul taken, the Shinigami allowed Minato to survive, much to the shock of Jiraiya and the Fourth Hokage. The reasoning he gave was that things were being put into motion, and his soul was not needed, but to not expect him to be leninent the next time they meet.

Afterwards, Minato told the people of Konoha what happened and told them that his daughters were the heros of Konoha for holding the beasts power from him. This caused the crowd to cheer for the now dubbed "Princesses of Konoha".

When the twins hit the age of three, Minato and Kushina began to train them to be able to control the Kyuubi's violent chakra, completely leaving Naruto out due to him not being as "special" as his sisters.

It wasn't just the training that they neglected him from, it was also everything that came with being a family. Birthdays, family outings, family meetings, even dinner sometimes! When he wanted something and the twins wanted something else... well you could guess what happened with Naruto's choice. Even his own sisters didn't give him much attention, but at least they tried compared to his parents!

The villagers on the other hand were far worse, due to them believing that Naruto was the demon fox that destroyed their village. They would either glare at him, curse him to death, and attack him on rare occasions. Those who knew Naruto wasn't the Kyuubi, but attacked anyway, believed by hurting the vessel then they were hurting the fox itself (and that was good enough for them).

Thats not to say everyone treated Naruto badly, he actually was able to make some friends within the village. He had the Hyuuga Clan, after stalling the Kumo Jonin long enough for Hiashi to incompasitate him and saving Hinata. He also had the backing of the Uchiha Clan when Itachi found Naruto bleeding from one of the attacks by the villagers, and took him home to be cared for. He stayed for two days and became close friends with both Sasuke and Satsuki Uchiha, Itachi's little brother and sister.

His family didn't even notice he was missing.

He was also friends with both Ayame and Teuchi Ichiraku, a daughter-father ramen stand owner who fed Naruto from time to time, and even the Third Hokage Hiruzen Sarutobi (who helped train Naruto in seals from time to time).

After hearing his parents laugh when Nami fell off the tree on top of Mito, Naruto's eyes narrowed in anger. He just, while not hating them (yet), did not like being ignored. He no longer saw any of them as his family (yet still cared for his sisters slightly). He rarely ever refers to himself as Uzumaki or Namikaze unless its formal, which he hates formalities to begin with.

Deciding he had enough of watching his sisters train while leaving him out, he left to his room; walking right past it.

He walked past his sister's room as well until he reached the end of the hall and pulled on the rope hanging from the ceiling. A door opened up as a set of stairs decended down and hit the floor softly. These stairs led to the attic of the house.

This was Naruto's playground. He conducted all his training in Fuinjutsu, jutsu theories, or even reading of high grade ninja training here. The attic was very spacious, as can be found in some big houses. More than half of his weapons that he's gathered over the years have been stored here. Naruto pulled down the wallpaper for the attic and used the walls as shelves. There was also a window in the back that allowed light and air into the room. Also unlike other attics, this one was clean; not a dust or even cobwep could be found.

Walking to the left, Naruto placed a scroll that had a fire emblem on it, on the wall shelf.

"Fire Style: Intelligent Hard Work is a lot harder than I thought it was going to be," Naruto said out loud.

"What did you expect, you are a natural wind and water affinity," came a voice from above Naruto, causing him to look up at the one who spoke.

The culprit who spoke was a strange creature that possessed blue skin and looked like a child-like canine. It had short black legs and torso, a blue tail, and a yellow collar. It had rounded bumps on the back of its forepaws, instead of hands. It wore a black "mask" and had red eyes with black slit pupils. It wore a smirk as it stared at Naruto.

"Shut it Riolu, it just means that I have to train harder to get it down, after all I AM trying to learn an A-rank jutsu."

"Yeah, but he does have a point Naruto. You learn techniques by doing them right, not having the technique blow up like fifteen times," came an amused voice that began chuckling.

Following the voice's direction, he found the culprit laying near the window and basking in the glow of the afternoon sunlight.

The one that spoke was a small slate gray, fox-like creature with red and black accents. Its ears were a triangular shape along with a large tuft of fur tipped with red on the top of its head. It has greenish, blue eyes with red eyelids. There are circular, red markings above the eyes that resemble eyebrows. Its muzzle is short and tapered with two small fangs seen protruding from the upper jaw. It also possessed a ruff of black fur around its neck and four short limbs tipped with red. It also had a short bushy tail.

"Whatever Zorua, like you have any room to talk," Naruto snipped back while sticking his tongue out at the now named Zorua.

In response, the three occupants stared at each other for a moment before laughing at their banter to each other. As they laughed, Naruto thought back to when these two joined his life, the day he almost lost his smile.

The best and worst day of his young life.

(Flashback- Two Year Ago)

"Tou-san, Kaa-san!" yelled a seven year old Naruto who ran into the house, only to find the place completely empty. Looking around, Naruto saw the house not only clean, but not a single soul was there.

"Tou-san, kaa-san, where are you!?" Still no response. "Mito-chan, Nami-chan, are you guys home?" Nothing.

Naruto continued to look around, but still found no one. Naruto ran up the stairs and down the hall to his parents room. which was left wide open. Naruto was hoping to tell his parents about learning his elemental affinities from Hiruzen-jiji and maybe convince them to train him now with his sisters. He knocked on the door before entering the room, only to find it empty too.

Deciding to look around the room, Naruto walked over to his parents desk and noticed something laying there.

It was a piece of paper that read Clan Heir Documentation.

Being a curious child, Naruto read the paper (he was really smart for his age, even if he was a goofy kid) and was downright crying by the end of the paper.

The paper read:

"Due to circumstances of not only strength and political ingenuity, we; Minato Namikaze and Kushina Uzumaki, head of the Namikaze and Uzumaki Clans; hereby denounce Naruto Uzumaki Namikaze as Clan Heir of both clans and transfer the titles to Mito Uzumaki as head of the Uzumaki Clan and Nami Namikaze as head of the Namikaze Clan when they reach the age of ten.

This is agreed upon by both Clan Heads:

Minato Namikaze

Kushina Uzumaki"

Naruto could not believe what he just read, he didn't WANT to believe what he just read. His clan heir status, the only real connection he had left emotionally to his family, has been taken from him!

He couldn't take it anymore right now, he had to get away! So he ran; he ran so fast through the village that he didn't even register the glares or sneers of the villagers. He continued to run until he reached the training grounds where he normally trains at alone, Training Ground Three.

'How could they do this to me?!' Naruto cried mentally as the hot tears flowed down his whiskered cheeks. 'I barely have anyone to call a friend, no one really gives me the time of day, and my parents don't even want me!' Falling to the ground next to the big lake, Naruto curled into a ball as he cried harder.

Due to all of his crying, Naruto never noticed the giant ripple forming in the lake (or the giant shadow that looked through the ripple with red eyes and black pupils before it flew off). The rippled lasted for a few moments before vanishing once again.

A few hours later, Naruto woke up due to crying himself to sleep near the riverbank. As he got up, Naruto stretched and yawned before looking at his reflection in the water; seeing that his face filled with the indication of dried tears. Deciding to clean up his face before going "home", Naruto bent forward to wash his face in the lake; only to trip on the wet ground and fall forward into the water.

Before Naruto hit the water though, a ripple appeared in the water once again and this time a loud roar was heard from it. This caused Naruto's eyes to widen in fear and only got wider as the water seemed to become circular and cave in on itself; exactly where Naruto was falling in.

Naruto did the only thing he could think of in that brief moment...

...scream out in fear and shock!

"AHHH Help!" were his last words before the portal completely shut and the ripples on the water vanished, like it was never there in the first place.

After falling through the hole in the water, Naruto found himself falling UP from the lake! He landed safely on a patch of grass and took quick breaths from screaming so loud and with no breath intake.

Getting up, he finally took notice of where he was at; which essentially meant he was clueless.

For miles, the only thing Naruto could see was a thick fog. The only other visible thing to him was the cut grass and the lake behind him.

Starting to get nervous again, Naruto looked around quickly and began calling out to see if anyone was around.

"Hello! Is anybody there!? Please, this isn't funny!" Suddenly Naruto heard rustling of grass to his left. Quickly pushing down his rising fear, he looked to the sourse, but saw nothing there.

"Um hello, is anyone there?" he called out in a much quieter tone than before. This time the rustling happened again and looking quickly he saw a patch of brown among the green grass. "Hello, can you help me?"

The response to his question was for the brown patch to take off in the opposite direction from him. This caused Naruto to give chase after it and continue calling to it. "Wait stop! Please, wait up!"

After running what seemed like thirty minutes, but was it was only five minutes, they exited the small grass enough for Naruto to see what he was chasing.

It was a small, brown fox-like creature with primarily brown fur. The tip of its bushy tail and its large furry collar were a cream color. It had short, slender legs with three toes and a pink pad on each foot. It had big brown eyes, long pointed ears, and a small black nose.

Naruto looked very confused, having never seen a strange looking fox before in his short miserable life.

'It actually looks kinda cute,' Naruto said mentally. "Your really fast, you know that?" He wasn't kidding, it took everything he had just to keep the little guy (or girl) in his sights. Let alone catch it.

The fox's response to his question was to tilt its head to the side, as if not understanding his words at all.

"Eevee?" was the response it gave to Naruto.

"Is that your name, Eevee?" Naruto asked, only for it to shout Eevee one more time and run off at incredible speeds. "Hey wait!" But Naruto's shout fell on deaf ears due to the fox being out of sight already.

"Great," Naruto sighed. "Now who can help explain to me what's going on?"

"RRRRGGHH!" was the response that Naruto got to his question. The roar caused Naruto to jump five feet in the air out of fright. He looked up to see who the culprit was...and regretted that decision immediately.

It was a large (almost as big as the Kyuubi) creature with a serpent- like body, with six black ghostly streamers protruding from its back that also had red tipped spikes at the ends. Instead of having four legs, the creature had six spikes on each side and four more additional spikes near the edge of its tail. It also possessed three gold half-rings that could probably grasp onto things tightly. It also had a golden arch on its forehead and a golden "mask" on its mouth. Its cold red eyes gazed fiercely at Naruto, who began to shake in fear.

Who could blame him though? Here he was, a young boy who only just started his training and only knows tree walking and his elements. Now here's a creature, bigger than anything he has seen before! Not only that, but said creature just seemed to ooze power that made Naruto feel dizzy.

Naruto in his fear, took an unconscious step back from the very intimidating creature before him. 'There is no way I'm just going to stand here and get eaten by this thing!' Naruto yelled mentally as he tensed his muscles to run off to the surrounding fog. 'I could use the fog to cover my escape.'

Noticing his tensing muscles, the creature looked into Naruto's fearful eyes.

"You know, running would be pointless young one," came a powerful voice that seemed to invade Naruto's mind!

Naruto jumped up slightly from the surprise of the voice. He landed hard on his butt that caused Naruto to wince in pain. "Ow," he said as he rubbed his butt.

The creature seemed to chuckle at what happened. It found amusement in Naruto's fear.

"Yeah very funny," Naruto mumbled before he paused in shock. "Wait, was that you?" He pointed at the creature that nodded its head.

"Yes child. My name is Giratina, Master of the Reverse World and Second-in-Command of the Pokemon Contract," the creature (now called Giratina) responded.

Naruto tilted his head to the side in confusion. Pokemon? Reverse World?

Seeing the confusion on Naruto's face, Giratina sighed at the lack of knowledge Naruto had (not that he could blame him).

Giratina went into an explanation on Pokemon, "Pokemon are summons of immense and diverse power. We each have our own typings such as Water, Fire, Lightning..." but he was interupted by an excited Naruto.

"Kind of like the elements for jutsus!"

"Yes, like what you use for your jutsu. We also have other elements though such as Flying, Ground, Poison, and Dark. You wouldn't know of us due to us not having a summoner for a very long time. I could go into a whole speech as in why, but we don't have that kind of time."

"Ok, but what is the Reverse World?" Naruto asked curiously. Strange how he feels more relaxed with this giant, powerful, and admittedly scary creature than he does with other people.

"This is the Reverse World, its a world that exists on the opposite side of reality. Its a world connected to reality and is a wonderful place, though confusing for some. This is where the Pokemon of the contract reside now, kinda like how the Toads have Mt. Myoboku."

"Ok, but why am I here Giratina sir," Naruto asked cautiously even though he honestly had no clue what he meant. There was no way him falling into this world was a simple coincidence.

'The kid is smart, he's guarded and ready to act if he has to by the way his muscles tensed at his question,' Giratina thought. "To be blunt Naruto, we want you to be our summoner." Naruto opened his mouth to question more, but Giratina continued. "Our Boss Summon, Arceus who is also my elder sister, has been watching you. She would be here talking to you, but she had a meeting she could not miss. She chose you because of your will, determination, heart, and your want to protect others (along with who your ancestor was). So Naruto Uzumaki Namikaze, will you be our new summoner?"

"Yes, I would be honored to sign your contract sir!" Naruto said trying to stop his tears of joy. Someone else actually believed in him!

"Then Naruto," Giratina began in a warm tone. "Welcome to the world of Pokemon," and with that the fog began to clear and revealed to Naruto the most amazing sight he has ever seen.

(Flashback End)

After that, Naruto was given two eggs to raise by Giratina. These two eggs held Naruto's starter Pokemon that he had to raise for a bit till they hatched. Two months after raising them, the eggs finally hatched. The blue and black stripped one became Riolu, while the black egg with red dots became Zorua.

Ever since meeting Giratina and the Pokemon, Naruto has been training non-stop. He even goes to the Reverse World often to be with the other Pokemon, instead of staying in the village. He learned so many different fighting styles from the Fighting type Pokemon, how to hunt and survive and most importantly...

...how to battle like a Pokemon.

You see, thanks to Giratina, Naruto is training to be an Aura Guardian. It turns out Aura is more of a gift for Naruto than chakra was!

They told him about the different aura users and Aura Guardians there were, about how the guardians kept the world in balance for all of Pokemon and human kind. Aura users had the capability to use any and all Pokemon attacks, but the aura user had to train in the attack to raise its effectiveness. Also the higher level of the attack, the more aura it burns; the more aura it burns, the more tired the user.

Aura worked in a similar way to nature chakra, the user pulls in the "aura" of the element of the attack and mixes it with the aura of the user. The two auras then mix together and form the attack, with no use of handsigns! The more mastery of the attack, the faster it forms.

The amount of aura each attack uses differ, the only real limit depends on the users stamina. The more stamina, the more attacks that could be used. Right now Naruto could use basic attacks from each type, but using them too much will really tire him out.

In Pokemon standards, he was about as strong as a level fifteen Pokemonn without the experience so about as strong as a high Genin in ninja standards.

Speaking of ninja, he has not neglected his ninja training at all. He has learned the Academy jutsu and could do them without handsigns! He also has five C-Rank jutsus, 2 D-Ranks water jutsus, and currently trying to learn an A-Rank fire jutsu (not much success).

To anyone paying attention, Naruto is actually a genius to near prodigy levels (though book work is still not his thing). He practically soaks up information like a sponge, always training; heck it took his sisters two days to master tree walking while it only took him thirty minutes and thats only because he had no one to teach him along with having high chunin reserves of chakra at the time.

"So Naruto, what's the plan now that you start the Academy in a week?" Riolu asked the young blonde.

"Yeah thats a good question." Zorua responded. "You won't have all the free time to enter the Reverse World anymore."

"Well I'm honestly not too sure, but I know I won't be hiding everything since that would leave me unwanted by the other Jonin instructors."

This caused the two Pokemon to look at Naruto with a deadpan expression before saying simultaniously,

"Don't lie, the only real reason is because you want to show off."

This caused Naruto to chuckle nervously and to rub the back of his head. "Ok you caught me. It doesn't hurt that I'll be beating the precious 'Golden Twins' at everything too."

Don't get Naruto wrong, he doesn't despise his sisters, but he doesn't like nor trust them either. The same could be said for everyone else in his family, he doesn't hate any of them.

He's more numb to them than anything; as an Aura Guardian, its best not to hate.

"Well before that, we should go see what Lady Arceus wanted from us since we will be late in ten minutes," Riolu said, already walking towards the exit with Zorua next to him.

"Yeah we should hur... wait, WHAT?!" Naruto responded dumbly before seeing the sun getting lower, signifying it to be late noon. "Why didn't you say anything eariler!? I don't want my first meeting with Lady Arceus to be bad!" Naruto began to panic as he thought about Giratina.

Its a well known fact that Giratina did NOT tolerate tardiness of any kind. Adding to the fact that he would be meeting the main Boss Summon and someone even Giratina (who Naruto knows is very powerful) could not defeat.

"Because watching you scramble around like a Combusken with its head cut off is hilarious," Riolu said chuckling as Zorua was holding his stomach as he laughed at Naruto.

"I hate you guys," Naruto responded as he narrowed is eyes at them.

"And we bathe ourselves squeaky clean with your hate," Riolu respned in kind, causing Zorua to laugh harder. Riolu began to follow suit as he too held his stomach from laughing so hard at the blonde, causing Naruto to glare harder at them.

"As hilarious as making fun of Naruto is," Zorua said finally getting his laughter under control, though he could wipe the grin off his face. "We really should get going."

"Yeah your right, lets go," Naruto responded, opening the window. "Lets meet at our usual training ground."

The two Pokemon nodded as they lept out the window into the tree and made their way to the training ground.

Naruto sighed as he put everything away and made his way down the attic stairs. After closing the attic, Naruto walked past the living room and looked to the backyard where his parents were still training his sisters.

Naruto slipped out the house, no one knowing he was even home.

After ten minutes of running through the village, ignoring the usual glares, he arrived to the training ground where he saw Riolu and Zorua waiting for him.

Naruto quickly flares his chakra, alerting them of his arrival, which both of them responded by dropping from the tree they were in and land next to the lake.

Wordlessly, Naruto walked to the crystal clear water before putting his palm on the surface and flowing his aura through it.

For a second, nothing happened. Suddenly the water collapsed in on itself and the portal to the Reverse World opened.

Naruto, along with the two Pokemon summons, quickly jumped into the portal and (like before) it closed without ever leaving a trace.

Jumping down, a young man with black, raven-like hair appeared in the clearing. His coal black eyes searched around before quickly turning red with three black tomoes encircling the black pupil as he looked around. This eye change meant the activation of one of Konoha's two Great Dojutsu's, the Sharingan, signifying this person as an Uchiha.

This young man was Itachi Uchiha, the heir and prodigy of the Uchiha Clan.

"Where did Naruto go, I know I saw him here," Itachi said out loud. "Maybe he went further ahead," and with that he took off towards the trees to look for his surrogate little brother.

AN: And that is it. That was a fun first chapter to write and way longer than I thought it was going to be. No I haven't given up on my other story, just really wanted to get this typed up since I have so much written for it. I hope you all enjoyed and please let me know what you thing.

Peace out!