Hey everybody, Jaykid1 here with a new story. I just started watching Fullmetal Alchemist again when I got this idea. I'm pretty sure this is an original concept, thou the alchemy he uses has been used before but those stories never amount to anything. Let's see if I can handle this.

Naruto will be OOC like most of the Naruto's in my stories. There's a brief look into the Naruto universe in this chapter and it's not canon at all.

Hope you guys enjoy.

Disclaimer: I own nothing but my idea.

-000-

The Valley of the End. A historical landmark created in the aftermath of the final battle between Madara Uchiha and Hashirama Senju, the two most powerful ninja's the world had ever seen. The two men were regarded as gods among men. The very land gave way under the power of these two titans. The battle raged on for days but in the end, Hashirama emerged victorious. Statues in the form of the two combatants were erected in the valley as a reminder of the battle. Nearly a century later, the battleground was being used once again by the descendents of the two men.

On top of Madara's statue stood his descendant. The figure was a male of average height with black hair styled back to resemble a ducks rear. He was wearing a grey, high collared shirt tucked into black pants with a black waist coat tied on with a large purple bow. On his feet he wore calf high boots with the heel and toes out. It was his eye however that gained the most attention. His right eye held the famed Sharingan of the Uchiha clan. His left eye on the other hand held a mutated version of the legendary Rinnegan. The Rinnegan is normally a grayish purple eye with six rings, the mutated version was red with six rings and tomoe. This man was Sasuke Uchiha, great grandson of Madara Uchiha and sole remaining member of the Uchiha Clan.

On top of Hashirama's statue stood his descendant. The figure was also a male of average height with bright blue eyes and shaggy red hair held back by a headband with a metal plate that depicted a leaf on it. He was wearing a tattered red and black track jacket that was torn open to reveal a mesh shirt. He was also wearing matching red pants with dark brown ninja sandals. The most unique trait about this individual was the six whisker marks on his face, three on each cheek. This man was Naruto Uzumaki Senju, great grandson of Hashirama Senju and sixth Hokage of Konoha.

Like their ancestors before them, Naruto and Sasuke were once friends but were now enemies due to four years prior when Sasuke shoved his lightning covered fist through Naruto's chest. After that, Naruto cut all ties he had with Sasuke and focused on his training with his master Jiraiya. Naruto's training with Jiraiya was long and arduous but he couldn't argue with the results. During his training, Naruto found out about his heritage and learned that he was a direct descendant of the First Hokage on his fathers side. His father was none other than Nawaki Senju, the grandson of the First Hokage and apprentice of Jiraiya(1).

Like his father and grandfather before him, Naruto discovered that he had the fabled Wood Style Kekkei Genkai of the Senju Clan. Naruto spent the first year of his training trip improving his chakra control and learning to control his bloodline. It was during that first year that he discovered the secret of his shadow clones. The first six months into his second year, Naruto spent working on and perfecting his primary element of wind. The rest of the year he spent working on learning sage mode. At the beginning of his third year, Naruto confronted the Kyuubi inside of him and fought it in an attempt to gain control of it's power. With the help of his parents, who sealed some of their chakra inside of the seal, Naruto took control of the Kyuubi's chakra. Before his parents vanished for good, they told him of the day they died and the masked man that was behind their deaths. Nawaki also told Naruto that when he returned to Konoha, to tell his aunt Tsunade to take him to his grave inside the Hokage monument. Once there he would be able to absorb the Yin Chakra that was sealed inside his soulless body. After all was said and done, Naruto spent the rest of the year learning everything he could from Jiraiya... well, everything other than porn or perversion, Naruto didn't have a death wish after all. In that last year, Naruto spoke to the fox daily as a way to be civil. It was slow going but eventually the fox warmed up to the redhead and even told him his true name, Kurama.

When Naruto returned to the village, he made a beeline for the Hokage tower to talk to his aunt about his father's request. Almost immediately afterwards, the two last remaining Senju's went to Nawaki's real grave. When they opened his coffin, they saw Nawaki's body was perfectly preserved, it was warm and looked like he was only sleeping. Placing his hand on the seal on his father's stomach, Naruto felt Kurama pulling his Yin Chakra from the corpse and into Naruto. Before long Naruto could had fully absorbed the Yin Chakra from Nawaki's body, causing the corpse to go cold.

The next day, Naruto was given an evaluation to see how much he'd improved in the 3 years he was gone. After singlehandedly defeating his lazy, neglectful former sensei Kakashi with little to no effort and on Jiraiya's recommendation, Tsunade promoted Naruto to Special Jonin. In the next few months following Naruto's return, there were several reunions and missions of all kinds, but a major change didn't take place until Jiraiya was killed. Jiraiya was infiltrating the hidden rain village when he came upon the leader of the terrorist group Akatsuki. Though he fought valiantly, Jiraiya was overwhelmed by the leaders power and ultimately met his end, but not before leaving behind a coded message for his student.

When news of his demise reached Konoha, the atmosphere around the whole village was somber. Naruto was saddened by Jiraiya's death but knew he'd have to mourn later, he just knew something horrible was on the horizon and he'd have to be ready for it. He had no idea how right he was.

Naruto was called to Mt. Myoboku, the home of the toads, to decipher Jiraiya's last message. It took him awhile, but Naruto finally managed to decode the message and learned that the leader of the Akatsuki was Jiraiya's old student Nagato, who split his power between 6 faux bodies. What Naruto didn't know was that while he was away, the leader of the Akatsuki attacked his home village. Naruto managed to get back just before the village could be completely destroyed.

After nearly an hour, Naruto stood victorious over the 6 faux bodies before he quickly went after Nagato. After a heated discussion that surprisingly didn't come to blows, Nagato used up all of his remaining Chakra to revive the people that he killed in Konoha. When Naruto returned to the village, the people welcomed him back with open arms and heralded him a hero.

There was still a problem however, Tsunade in an attempt to heal the entire populace at once had suffered Chakra exhaustion and slipped into a coma. With Tsunade out of commission for an unknown amount of time, the council and the Daimyo thought it prudent to elect a new Hokage. One man, Danzo Shimura, a man who competed with the third Hokage saw this as a chance to seize power of the village and turn it into a military force he thought it should have always been. However, another was chosen. The first, second and fifth Hokage's were all from the Senju clan so the Daimyo figured the other Senju he heard about would be the perfect person to lead Konoha. When Naruto was named Hokage, Danzo mysteriously disappeared.

Now that Naruto was the Hokage, he had to attend a 5 Kage summit. After gathering Neji and Shikamaru, the three leaf shinobi made their way toward the summit where the subject of the Akatsuki came up. What none of the Kage knew was that Danzo had initially planned to attack the summit but had a run in with Sasuke the led to his demise. Back at the summit, as it was wrapping up, the true leader of the Akatsuki, who called himself Madara Uchiha, announced the fourth great ninja war.

Before long the war started. 'Madara' had aligned himself with Kabuto who revived fallen warriors from history. To make a long story short, the real Madara Uchiha was revived, the man they thought was Madara turned out to be Kakashi's old team mate Obito, Naruto was overwhelmed and had Kurama taken from him, Sasuke was killed by Madara, Naruto and Sasuke met the Sage of Six Paths and were given his power, Madara was used as a conduit for the Rabbit goddess Kaguya Ootsutsuki, Naruto and Sasuke sealed her away again, which brings us to now.

Naruto and Sasuke fought much like Hashirama and Madara did years ago, destroying the surrounding landscape with the destruction they brought. Both knew they were on their last legs. The fate of the world was on both their shoulders. One would save it, the other would watch it burn. In the end a third outcome came about that neither combatant foresaw. Putting the last of their energy into their final attacks, they clashed. The resulting power struggle destroyed everything in a 5 mile radius. When debris cleared, both men had vanished, never to be seen in their world ever again, ending the feud between the between the Uchiha and Senju clans once and for all.

-000-

The Gate...

When Naruto came to, he saw white. Up, down, left, right, everywhere he looked there was white. He wasn't even sure he was standing on anything or if he was floating. When he looked behind him, he saw a large door with strange markings on it. It looked like some sort of tree. "Where am I?" He asked out loud.

"Ah I see you are awake." A distorted voice that sounded masculine and feminine at the same time said from behind him.

Naruto turned around and only saw this dark mist that formed the silhouette of a person with a large smile. "Who are you?"

The silhouette's smile seemed to get larger. "That is the question isn't it. You can call me the World, or perhaps the Universe, maybe God or the Truth maybe. I am all and the one. But most importantly, I am... you." The Silhouette said as it pointed at Naruto. "As for where you are, this is the world of the gate. You came here along with the other Child of Prophecy after the power lock the two of you were in killed you both."

Hearing that he had in fact died didn't bother Naruto as much as he thought it would. He knew that if he and Sasuke fought they were both going to die. "I think I'll stick with Truth." Naruto said as he looked around before focusing back on Truth. "If Sasuke came through here as well, where is he?"

Truth's smile seemed to turn sinister. "He awoke a few minutes before you and attacked on sight, making my decision easier."

"Decision?" Naruto inquired.

Truth nodded. "When both the children of prophecy came into my domain, I knew one of them would be my champion and go through the gate while the other became the toll, I didn't know which would be which until the dark haired one awoke."

"And considering, Sasuke is no where to be found, I take it I'm the Champion. What exactly would you have me do?" Naruto asked.

"Quite simple, you will be reborn into a new world where a being that was summoned from the gate centuries ago is trying to usurp my power. I know not exactly when this will happen but I know it will be in the lifetime of your new life."

"How exactly am I suppose to stop it?"

"This new world doesn't use chakra like your old world, the energy used is called alchemy as well as alkahestry. However you will be a special case..." The Truth trailed off as Naruto suddenly felt his eyes burning before he suddenly saw things much clearer than he ever had before. When he looked up at Truth he was surprised to see that his eyes were staring back at him. "While I used the one formerly known as Sasuke for the toll, his eye's could prove to helpful. You will still have your chakra but you'll only be able to use a few eye techniques. The rest you'll learn when you go through the gate." It said with that sinister smile.

"And what am I to do in the meantime?"

"Whatever you want, grow up, get married, have a family, become the world's savior or it's destroyer. As long as you stop the usurper, I can't honestly say I care." The Truth said. Suddenly the gate behind Naruto opened and arms came out and wrapped around him. "Goodbye Naruto Uzumaki Senju. Good luck." Truth said as Naruto was pulled into the gate.

As Naruto was being pulled toward wherever, images appeared before him, images his new sharingan copied down while his rinnegan broke it all down. So much information was downloaded into his head that it felt like it was going to burst. He tried shutting his eye's but they wouldn't close. The pain was so great that Naruto didn't even realize that he was screaming. Just when Naruto thought his head would explode, he saw a bright light before everything went black.

-000-

Youswell, Amestris, 1889...

Van Hohenheim was both happy and saddened at the moment. Happy because he was currently holding his first child in his arms. And saddened because his lover and the boys mother had died shortly after birthing him and naming him. What Hohenheim found strange was that his son did not cry when he was born. The boys golden eyes that he received from him held an intelligence to them that seemed well beyond the childs years.

It had been a week since his son's birth and now Hohenheim stood before his lovers grave with his son Naruto held closely in his arms. "Don't worry Dante, I'll keep him safe." He said before he left towards Resembool.

-000-

1. Basically Nawaki and Minato switch places.

That's the beginning chapter. Hope you all enjoy.

Let me explain a few things. This takes place in the FMA Brotherhood storyline. There will be a few things that were in the 2003 FMA storyline that will be in this story as well. The Dante that gave birth to Naruto was the Dante in Lyra's body, only she was human and not the leader of the Humonculis. So as you can see Naruto will be the older brother of Ed and Al and step son of Trisha.

Anymore questions PM me and I'll explain.

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TTFN!